Construct: ORF TRCN0000488589

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019946.1_s317c1
DNA Barcode:
TGGGTCACGGCAGAAACTACTCCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RARB (5915)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488589
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5915 RARB retinoic acid receptor beta NM_000965.4 99.9% 99.7% 1344_1345insG
2 human 5915 RARB retinoic acid receptor beta NM_001290216.2 90.5% 84.6% (many diffs)
3 human 5915 RARB retinoic acid receptor beta NM_001290277.1 89.6% 89.5% 785_786ins138;1206_1207insG
4 human 5915 RARB retinoic acid receptor beta NM_001290300.1 89.4% 88.1% (many diffs)
5 human 5915 RARB retinoic acid receptor beta NM_001290266.1 88.6% 87.9% (many diffs)
6 human 5915 RARB retinoic acid receptor beta NM_001290217.1 74.9% 74.8% 0_1ins336;1008_1009insG
7 human 5915 RARB retinoic acid receptor beta NM_001290276.1 74.9% 74.8% 0_1ins336;1008_1009insG
8 human 5915 RARB retinoic acid receptor beta NM_016152.3 74.9% 74.8% 0_1ins336;1008_1009insG
9 human 5915 RARB retinoic acid receptor beta NR_110892.1 36.7% 1_469del;917_918ins161;1653_3061delinsG
10 human 5915 RARB retinoic acid receptor beta NR_110893.1 35.3% 1_469del;1254_1255ins205;1609_3017delinsG
11 mouse 218772 Rarb retinoic acid receptor, beta NM_011243.2 91% 98.2% (many diffs)
12 mouse 218772 Rarb retinoic acid receptor, beta NM_001289761.1 81.5% 83.8% (many diffs)
13 mouse 218772 Rarb retinoic acid receptor, beta NM_001289762.1 80.9% 87% (many diffs)
14 mouse 218772 Rarb retinoic acid receptor, beta NM_001289760.1 79.8% 83.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
1419
ORF length:
1347
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catgtttgac tgtatggatg ttctgtcagt gagtcctggg caaatcctgg
121atttctacac tgcgagtccg tcttcctgca tgctccagga gaaagctctc aaagcatgct
181tcagtggatt gacccaaacc gaatggcagc atcggcacac tgctcaatca attgaaacac
241agagcaccag ctctgaggaa ctcgtcccaa gccccccatc tccacttcct ccccctcgag
301tgtacaaacc ctgcttcgtc tgccaggaca aatcatcagg gtaccactat ggggtcagcg
361cctgtgaggg atgtaagggc tttttccgca gaagtattca gaagaatatg atttacactt
421gtcaccgaga taagaactgt gttattaata aagtcaccag gaatcgatgc caatactgtc
481gactccagaa gtgctttgaa gtgggaatgt ccaaagaatc tgtcaggaat gacaggaaca
541agaaaaagaa ggagacttcg aagcaagaat gcacagagag ctatgaaatg acagctgagt
601tggacgatct cacagagaag atccgaaaag ctcaccagga aactttccct tcactctgcc
661agctgggtaa atacaccacg aattccagtg ctgaccatcg agtccgactg gacctgggcc
721tctgggacaa attcagtgaa ctggccacca agtgcattat taagatcgtg gagtttgcta
781aacgtctgcc tggtttcact ggcttgacca tcgcagacca aattaccctg ctgaaggccg
841cctgcctgga catcctgatt cttagaattt gcaccaggta taccccagaa caagacacca
901tgactttctc agacggcctt accctaaatc gaactcagat gcacaatgct ggatttggtc
961ctctgactga ccttgtgttc acctttgcca accagctcct gcctttggaa atggatgaca
1021cagaaacagg ccttctcagt gccatctgct taatctgtgg agaccgccag gaccttgagg
1081aaccgacaaa agtagataag ctacaagaac cattgctgga agcactaaaa atttatatca
1141gaaaaagacg acccagcaag cctcacatgt ttccaaagat cttaatgaaa atcacagatc
1201TCCGTAGCAT CAGTGCTAAA GGTGCAGAGC GTGTAATTAC CTTGAAAATG GAAATTCCTG
1261GATCAATGCC ACCTCTCATT CAAGAAATGC TGGAGAATTC TGAAGGACAT GAACCCTTGA
1321CCCCAAGTTC AAGTGGGAAC ACAGCAGAGC ACAGTCCTAG CATCTCACCC AGCTCAGTGG
1381AAAACAGTGG GGTCAGTCAG TCACCACTCG TGCAAGACCC AGCTTTCTTG TACAAAGTGG
1441TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
1501CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
1561ATGGGTCACG GCAGAAACTA CTCCCACGCG TTAAGTCgac aatcaacctc tggattacaa
1621aatttgtgaa agatt

Download FASTA (ORF) (Full)

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