Transcript: Human NM_001290216.2

Homo sapiens retinoic acid receptor beta (RARB), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-07-16
Taxon:
Homo sapiens (human)
Gene:
RARB (5915)
Length:
3265
CDS:
492..1859

Additional Resources:

NCBI RefSeq record:
NM_001290216.2
NBCI Gene record:
RARB (5915)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001290216.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000021194 CCGAGATAAGAACTGTGTTAT pLKO.1 866 CDS 100% 13.200 9.240 N RARB n/a
2 TRCN0000021196 GCCACCTCTCATTCAAGAAAT pLKO.1 1709 CDS 100% 13.200 9.240 N RARB n/a
3 TRCN0000427133 TCAGACGGCCTTACCCTAAAT pLKO_005 1350 CDS 100% 13.200 9.240 N RARB n/a
4 TRCN0000222396 CCGCAGAAGTATTCAGAAGAA pLKO.1 827 CDS 100% 4.950 3.465 N Rarb n/a
5 TRCN0000021195 CTGGGTAAATACACCACGAAT pLKO.1 1104 CDS 100% 4.950 3.465 N RARB n/a
6 TRCN0000021198 GACATCCTGATTCTTAGAATT pLKO.1 1290 CDS 100% 0.000 0.000 N RARB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001290216.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01376 pDONR223 100% 90.6% 84.8% None (many diffs) n/a
2 ccsbBroad304_01376 pLX_304 0% 90.6% 84.8% V5 (many diffs) n/a
3 TRCN0000469377 CGCATTGTATTTCGACTGGATGGT pLX_317 34% 90.6% 84.8% V5 (many diffs) n/a
4 TRCN0000488589 TGGGTCACGGCAGAAACTACTCCC pLX_317 16.4% 90.5% 84.6% V5 (many diffs) n/a
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