Construct: ORF TRCN0000488866

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020413.1_s317c1
DNA Barcode:
ATGTACATGCCGCGAATCAACAAC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
CSNK1G1 (53944)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488866
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 53944 CSNK1G1 casein kinase 1 gamma 1 NM_001329606.2 90.7% 87.9% (many diffs)
2 human 53944 CSNK1G1 casein kinase 1 gamma 1 NM_022048.5 90.7% 87.9% (many diffs)
3 human 53944 CSNK1G1 casein kinase 1 gamma 1 NM_001329607.2 87.4% 85% (many diffs)
4 human 53944 CSNK1G1 casein kinase 1 gamma 1 NM_001329605.2 81.2% 77.3% (many diffs)
5 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 XM_011242712.1 90.2% 92.8% (many diffs)
6 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 XM_011242711.1 88.1% 90.2% (many diffs)
7 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 XM_011242710.1 85.3% 85.5% (many diffs)
8 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 XM_011242709.1 83.7% 83.9% (many diffs)
9 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 XM_017313273.1 79.4% 75.5% (many diffs)
10 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 NM_173185.2 78.6% 77.8% (many diffs)
11 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 XM_011242708.1 78.6% 77.8% (many diffs)
12 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 XM_006511008.2 77.2% 76.5% (many diffs)
13 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 XM_011242703.1 77.2% 76.5% (many diffs)
14 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 XM_011242704.1 77.2% 76.5% (many diffs)
15 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 XM_011242705.1 77.2% 76.5% (many diffs)
16 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 XM_011242706.1 77.2% 76.5% (many diffs)
17 mouse 214897 Csnk1g1 casein kinase 1, gamma 1 XM_011242707.1 77.2% 76.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
84
ORF end:
1263
ORF length:
1179
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggctccgc ggcccccttc accatggacc atcctagtag ggaaaaggat gaaagacaac
121ggacaactaa acccatggca caaaggagtg cacactgctc tcgaccatct ggctcctcat
181cgtcctctgg ggttcttatg gtgggaccca acttcagggt tggcaagaag ataggatgtg
241ggaacttcgg agagctcaga ttaggtaaaa atctctacac caatgaatat gtagcaatca
301aactggaacc aataaaatca cgtgctccac agcttcattt agagtacaga ttttataaac
361agcttggcag tgcaggtgaa ggtctcccac aggtgtatta ctttggacca tgtgggaaat
421ataatgccat ggtgctggag ctccttggcc ctagcttgga ggacttgttt gacctctgtg
481accgaacatt tactttgaag acggtgttaa tgatagccat ccagctgctt tctcgaatgg
541aatacgtgca ctcaaagaac ctcatttacc gagatgtcaa gccagagaac ttcctgattg
601gtcgacaagg caataagaaa gagcatgtta tacacattat agactttgga ctggccaagg
661aatacattga ccccgaaacc aaaaaacaca taccttatag ggaacacaaa agtttaactg
721gaactgcaag atatatgtct atcaacacgc atcttggcaa agagcaaagc cggagagatg
781atttggaagc cctaggccat atgttcatgt atttccttcg aggcagcctc ccctggcaag
841gactcaaggc tgacacatta aaagagagat atcaaaaaat tggtgacacc aaaaggaata
901ctcccattga agctctctgt gagaactttc cagaggagat ggcaacctac cTTCGATATG
961TCAGGCGACT GGACTTCTTT GAAAAACCTG ATTATGAGTA TTTACGGACC CTCTTCACAG
1021ACCTCTTTGA AAAGAAAGGC TACACCTTTG ACTATGCCTA TGATTGGGTT GGGAGACCTA
1081TTCCTACTCC AGTAGGGTCA GTTCACGTAG ATTCTGGTGC ATCTGCAATA ACTCGAGAAA
1141GCCACACACA TAGGGATCGG CCATCACAAC AGCAGCCTCT TCGAAATCAG AGCCTTAGGA
1201CTGTTACAGC TGAGCATTAT GATGTTAACA ACTCAGCCAT CTGGCACAGG GGAAGAGGCA
1261CCTAAAAGCT TAAGGGTGGG CGCGCCGACC CAGCTTTCTT GTACAAAGTG GTTGATATCG
1321GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
1381AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAATGTACAT
1441GCCGCGAATC AACAACACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1501aagatt

Download FASTA (ORF) (Full)

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