Construct: ORF TRCN0000488866
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020413.1_s317c1
- DNA Barcode:
- ATGTACATGCCGCGAATCAACAAC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1G1 (53944)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488866
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329606.2 | 90.7% | 87.9% | (many diffs) |
| 2 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_022048.5 | 90.7% | 87.9% | (many diffs) |
| 3 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329607.2 | 87.4% | 85% | (many diffs) |
| 4 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329605.2 | 81.2% | 77.3% | (many diffs) |
| 5 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242712.1 | 90.2% | 92.8% | (many diffs) |
| 6 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242711.1 | 88.1% | 90.2% | (many diffs) |
| 7 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242710.1 | 85.3% | 85.5% | (many diffs) |
| 8 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242709.1 | 83.7% | 83.9% | (many diffs) |
| 9 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_017313273.1 | 79.4% | 75.5% | (many diffs) |
| 10 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | NM_173185.2 | 78.6% | 77.8% | (many diffs) |
| 11 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242708.1 | 78.6% | 77.8% | (many diffs) |
| 12 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_006511008.2 | 77.2% | 76.5% | (many diffs) |
| 13 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242703.1 | 77.2% | 76.5% | (many diffs) |
| 14 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242704.1 | 77.2% | 76.5% | (many diffs) |
| 15 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242705.1 | 77.2% | 76.5% | (many diffs) |
| 16 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242706.1 | 77.2% | 76.5% | (many diffs) |
| 17 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242707.1 | 77.2% | 76.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 84
- ORF end:
- 1263
- ORF length:
- 1179
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggctccgc ggcccccttc accatggacc atcctagtag ggaaaaggat gaaagacaac 121 ggacaactaa acccatggca caaaggagtg cacactgctc tcgaccatct ggctcctcat 181 cgtcctctgg ggttcttatg gtgggaccca acttcagggt tggcaagaag ataggatgtg 241 ggaacttcgg agagctcaga ttaggtaaaa atctctacac caatgaatat gtagcaatca 301 aactggaacc aataaaatca cgtgctccac agcttcattt agagtacaga ttttataaac 361 agcttggcag tgcaggtgaa ggtctcccac aggtgtatta ctttggacca tgtgggaaat 421 ataatgccat ggtgctggag ctccttggcc ctagcttgga ggacttgttt gacctctgtg 481 accgaacatt tactttgaag acggtgttaa tgatagccat ccagctgctt tctcgaatgg 541 aatacgtgca ctcaaagaac ctcatttacc gagatgtcaa gccagagaac ttcctgattg 601 gtcgacaagg caataagaaa gagcatgtta tacacattat agactttgga ctggccaagg 661 aatacattga ccccgaaacc aaaaaacaca taccttatag ggaacacaaa agtttaactg 721 gaactgcaag atatatgtct atcaacacgc atcttggcaa agagcaaagc cggagagatg 781 atttggaagc cctaggccat atgttcatgt atttccttcg aggcagcctc ccctggcaag 841 gactcaaggc tgacacatta aaagagagat atcaaaaaat tggtgacacc aaaaggaata 901 ctcccattga agctctctgt gagaactttc cagaggagat ggcaacctac cTTCGATATG 961 TCAGGCGACT GGACTTCTTT GAAAAACCTG ATTATGAGTA TTTACGGACC CTCTTCACAG 1021 ACCTCTTTGA AAAGAAAGGC TACACCTTTG ACTATGCCTA TGATTGGGTT GGGAGACCTA 1081 TTCCTACTCC AGTAGGGTCA GTTCACGTAG ATTCTGGTGC ATCTGCAATA ACTCGAGAAA 1141 GCCACACACA TAGGGATCGG CCATCACAAC AGCAGCCTCT TCGAAATCAG AGCCTTAGGA 1201 CTGTTACAGC TGAGCATTAT GATGTTAACA ACTCAGCCAT CTGGCACAGG GGAAGAGGCA 1261 CCTAAAAGCT TAAGGGTGGG CGCGCCGACC CAGCTTTCTT GTACAAAGTG GTTGATATCG 1321 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1381 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAATGTACAT 1441 GCCGCGAATC AACAACACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1501 aagatt