Construct: ORF TRCN0000491259
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021602.2_s317c1
- DNA Barcode:
- ACCCAGTTTATTCAAGCATACCTT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- SSX2 (6757)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000491259
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 727837 | SSX2B | SSX family member 2B | NM_001278701.2 | 100% | 100% | |
| 2 | human | 6757 | SSX2 | SSX family member 2 | NM_003147.5 | 100% | 100% | |
| 3 | human | 6757 | SSX2 | SSX family member 2 | NM_001278697.1 | 84.6% | 75.7% | 543_544ins68;602_642del |
| 4 | human | 727837 | SSX2B | SSX family member 2B | NM_001278702.2 | 84.6% | 75.7% | 543_544ins68;602_642del |
| 5 | human | 280658 | SSX7 | SSX family member 7 | XM_017029430.1 | 81.1% | 65.5% | (many diffs) |
| 6 | human | 727837 | SSX2B | SSX family member 2B | NM_001164417.3 | 73.6% | 72% | 465_466ins146;524_564del |
| 7 | human | 6757 | SSX2 | SSX family member 2 | NM_175698.2 | 73.6% | 72% | 465_466ins146;524_564del |
| 8 | human | 10214 | SSX3 | SSX family member 3 | XM_011543885.2 | 70.7% | 60.7% | (many diffs) |
| 9 | human | 10214 | SSX3 | SSX family member 3 | NM_021014.4 | 70.2% | 64.4% | (many diffs) |
| 10 | human | 6758 | SSX5 | SSX family member 5 | NM_175723.1 | 68.3% | 53.6% | (many diffs) |
| 11 | human | 6758 | SSX5 | SSX family member 5 | XM_011543949.2 | 68.3% | 53.6% | (many diffs) |
| 12 | human | 6758 | SSX5 | SSX family member 5 | XM_017029758.2 | 68.3% | 53.6% | (many diffs) |
| 13 | human | 280658 | SSX7 | SSX family member 7 | NM_173358.2 | 67.7% | 53.6% | (many diffs) |
| 14 | human | 548313 | SSX4B | SSX family member 4B | NM_001034832.3 | 66.9% | 56.8% | (many diffs) |
| 15 | human | 6759 | SSX4 | SSX family member 4 | NM_005636.4 | 66.9% | 56.8% | (many diffs) |
| 16 | human | 548313 | SSX4B | SSX family member 4B | XM_017029613.1 | 66.9% | 56.8% | (many diffs) |
| 17 | human | 6759 | SSX4 | SSX family member 4 | XM_017029759.1 | 66.9% | 56.8% | (many diffs) |
| 18 | human | 6756 | SSX1 | SSX family member 1 | NM_001278691.2 | 65.3% | 47.9% | (many diffs) |
| 19 | human | 6756 | SSX1 | SSX family member 1 | NM_005635.4 | 65.3% | 47.9% | (many diffs) |
| 20 | human | 6758 | SSX5 | SSX family member 5 | NM_021015.4 | 58.2% | 45.9% | (many diffs) |
| 21 | human | 280658 | SSX7 | SSX family member 7 | XM_017029431.1 | 53.6% | 49.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 741
- ORF length:
- 669
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgaacgga gacgacgcct ttgcaaggag acccacggtt ggtgctcaaa 121 taccagagaa gatccaaaag gccttcgatg atattgccaa atacttctct aaggaagagt 181 gggaaaagat gaaagcctcg gagaaaatct tctatgtgta tatgaagaga aagtatgagg 241 ctatgactaa actaggtttc aaggccaccc tcccaccttt catgtgtaat aaacgggccg 301 aagacttcca ggggaatgat ttggataatg accctaaccg tgggaatcag gttgaacgtc 361 ctcagatgac tttcggcagg ctccagggaa tctccccgaa gatcatgccc aagaagccag 421 cagaggaagg aaatgattcg gaggaagtgc cagaagcatc tggcccacaa aatgatggga 481 aagagctgtg ccccccggga aaaccaacta cctcTGAGAA GATTCACGAG AGATCTGGAA 541 ATAGGGAGGC CCAAGAAAAG GAAGAGAGAC GCGGAACAGC TCATCGGTGG AGCAGTCAGA 601 ACACACACAA CATTGGTCGA TTCAGTTTGT CAACTTCTAT GGGTGCAGTT CATGGTACCC 661 CCAAAACAAT TACACACAAC AGGGACCCAA AAGGGGGGAA CATGCCTGGA CCCACAGACT 721 GCGTGAGAGA AAACAGCTGG TAGAACCCAG CTTTCTTGTA CAAAGTGGTT GATATCGGTA 781 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 841 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA CCCAGTTTAT 901 TCAAGCATAC CTTACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 961 att