Construct: ORF TRCN0000492337

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019512.2_s317c1
DNA Barcode:
ACACGTCCGAGTCATCCTGCGGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TNIK (23043)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000492337
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23043 TNIK TRAF2 and NCK interacting k... NM_001161561.3 99.9% 100% 2244G>C
2 human 23043 TNIK TRAF2 and NCK interacting k... NM_001161562.3 99.3% 99.3% 2244G>C;2295_2296ins24
3 human 23043 TNIK TRAF2 and NCK interacting k... NM_015028.4 97.8% 97.8% 1332_1418del;2331G>C
4 human 23043 TNIK TRAF2 and NCK interacting k... NM_001161560.3 97.2% 97.2% 1332_1418del;2331G>C;2382_2383ins24
5 human 23043 TNIK TRAF2 and NCK interacting k... NM_001161565.3 95.8% 95.8% 1519_1520ins165;2079G>C
6 human 23043 TNIK TRAF2 and NCK interacting k... NM_001161566.3 95.2% 95.2% 1519_1520ins165;2079G>C;2130_2131ins24
7 human 23043 TNIK TRAF2 and NCK interacting k... NM_001161563.3 93.7% 93.8% 1332_1418del;1606_1607ins165;2166G>C
8 human 23043 TNIK TRAF2 and NCK interacting k... NM_001161564.3 93.2% 93.2% (many diffs)
9 mouse 665113 Tnik TRAF2 and NCK interacting k... XM_006535521.2 91% 98.7% (many diffs)
10 mouse 665113 Tnik TRAF2 and NCK interacting k... NM_001163008.1 90.5% 98.1% (many diffs)
11 mouse 665113 Tnik TRAF2 and NCK interacting k... XM_006535520.2 89.1% 95% (many diffs)
12 mouse 665113 Tnik TRAF2 and NCK interacting k... NM_026910.1 89.1% 96.6% (many diffs)
13 mouse 665113 Tnik TRAF2 and NCK interacting k... XM_006535519.2 88.9% 96.4% (many diffs)
14 mouse 665113 Tnik TRAF2 and NCK interacting k... NM_001163007.1 88.5% 96.1% (many diffs)
15 mouse 665113 Tnik TRAF2 and NCK interacting k... XM_006535518.2 87.4% 93.2% (many diffs)
16 mouse 665113 Tnik TRAF2 and NCK interacting k... XM_006535517.2 87.2% 93% (many diffs)
17 mouse 665113 Tnik TRAF2 and NCK interacting k... NM_001163009.1 86.9% 92.7% (many diffs)
18 mouse 665113 Tnik TRAF2 and NCK interacting k... XM_011249705.2 85.4% 91% (many diffs)
19 mouse 665113 Tnik TRAF2 and NCK interacting k... XM_011249704.2 83.6% 89.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
87
ORF end:
4080
ORF length:
3993
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaatccg
61cggccgcccc cttcacctct agagccatgg cgagcgactc cccggctcga agcctggatg
121aaatagatct ctcggctctg agggaccccg cagggatctt tgaattggtg gaacttgttg
181gaaatggaac atacgggcaa gtttataagg gtcgtcatgt caaaacgggc cagcttgcag
241ccatcaaggt tatggatgtc acaggggatg aagaggaaga aatcaaacaa gaaattaaca
301tgttgaagaa atattctcat caccggaata ttgctacata ctatggtgct tttatcaaaa
361agaacccacc aggcatggat gaccaacttt ggttggtgat ggagttttgt ggtgctggct
421ctgtcaccga cctgatcaag aacacaaaag gtaacacgtt gaaagaggag tggattgcat
481acatctgcag ggaaatctta cgggggctga gtcacctgca ccagcataaa gtgattcatc
541gagatattaa agggcaaaat gtcttgctga ctgaaaatgc agaagttaaa ctagtggact
601ttggagtcag tgctcagctt gatcgaacag tgggcaggag gaatactttc attggaactc
661cctactggat ggcaccagaa gttattgcct gtgatgaaaa cccagatgcc acatatgatt
721tcaagagtga cttgtggtct ttgggtatca ccgccattga aatggcagaa ggtgctcccc
781ctctctgtga catgcacccc atgagagctc tcttcctcat cccccggaac ccagcgcctc
841ggctgaagtc taagaagtgg tcaaaaaaat tccagtcatt tattgagagc tgcttggtaa
901agaatcacag ccagcgacca gcaacagaac aattgatgaa gcatccattt atacgagacc
961aacctaatga gcgacaggtc cgcattcaac tcaaggacca tattgataga acaaagaaga
1021agcgaggaga aaaagatgag acagagtatg agtacagtgg aagtgaggaa gaagaggagg
1081agaatgactc aggagagccc agctccatcc tgaatctgcc aggggagtcg acgctgcgga
1141gggactttct gaggctgcag ctggccaaca aggagcgttc tgaggcccta cggaggcagc
1201agctggagca gcagcagcgg gagaatgagg agcacaagcg gcagctgctg gccgagcgtc
1261agaagcgcat cgaggagcag aaagagcaga ggcggcggct ggaggagcaa caaaggcgag
1321agaaggagct gcggaagcag caggagaggg agcagcgccg gcactatgag gagcagatgc
1381gccgggagga ggagaggagg cgtgcggagc atgaacagga atataagcgc aaacaattgg
1441aagaacagag acaagcagaa agactgcaga ggcagctaaa gcaagaaaga gactacttag
1501tttcccttca gcatcagcgg caggagcaga ggcctgtgga gaagaagcca ctgtaccatt
1561acaaagaagg aatgagtcct agtgagaagc cagcatgggc caaggaggta gaagaacggt
1621caaggctcaa ccggcaaagt tcccctgcca tgcctcacaa ggttgccaac aggatatctg
1681accccaacct gcccccaagg tcggagtcct tcagcattag tggagttcag cctgctcgaa
1741caccccccat gctcagacca gtcgatcccc agatcccaca tctggtagct gtaaaatccc
1801agggacctgc cttgaccgcc tcccagtcag tgcacgagca gcccacaaag ggcctctctg
1861ggtttcagga ggctctgaac gtgacctccc accgcgtgga gatgccacgc cagaactcag
1921atcccacctc ggaaaatcct cctctcccca ctcgcattga aaagtttgac cgaagctctt
1981ggttacgaca ggaagaagac attccaccaa aggtgcctca aagaacaact tctatatccc
2041cagcattagc cagaaagaat tctcctggga atggtagtgc tctgggaccc agactaggat
2101ctcaacccat cagagcaagc aaccctgatc tccggagaac tgagcccatc ttggagagcc
2161ccttgcagag gaccagcagt ggcagttcct ccagctccag cacccctagc tcccagccca
2221gctcccaagg aggctcccag cctggatcac aagcaggatc cagtgaacgc accagagttc
2281gagccaacag taagtcagaa ggatcacctg tgctccccca tgagcctgcc aaggtgaaac
2341cagaagaatc cagggacatt acccggccca gtcgaccagc tagctacaaa aaagctatag
2401atgaggatct gacggcatta gccaaagaac taagagaact ccggattgaa gaaacaaacc
2461gcccaatgaa gaaggtgact gattactcct cctccagtga ggagtcagaa agtagcgagg
2521aagaggagga agatggagag agcgagaccc atgatgggac agtggctgtc agcgacatac
2581ccagactgat accaacagga gctccaggca gcaacgagca gtacaatgtg ggaatggtgg
2641ggacgcatgg gctggagacc tctcatgcgg acagtttcag cggcagtatt tcaagagaag
2701gaaccttgat gattagagag acgtctggag agaagaagcg atctggccac agtgacagca
2761atggctttgc tggccacatc aacctccctg acctggtgca gcagagccat tctccagctg
2821gaaccccgac tgagggactg gggcgcgtct caacccattc ccaggagatg gactctggga
2881ctgaatatgg catggggagc agcaccaaag cctccttcac cccctttgtg gaccccagag
2941tataccagac gtctcccact gatgaagatg aagaggatga ggaatcatca gccgcagctc
3001tgtttactag cgaacttctt aggcaagaac aggccaaact caatgaagca agaaagattt
3061cggtggtaaa tgtaaaccca accaacattc ggcctcatag cgacacacca gaaatcagaa
3121aatacaagaa acgattcaac tcagaaatac tttgtgcagc tctgtggggt gtaaaccttc
3181tggtggggac tgaaaatggc ctgatgcttt tggaccgaag tgggcaaggc aaagtctata
3241atctgatcaa ccggaggcga tttcagcaga tggatgtgct agagggactg aatgtccttg
3301tgacaatttc aggaaagaag aataagctac gagtttacta tctttcatgg ttaagaaaca
3361gaatactaca taatgaccca gaagtagaaa agaaacaagg ctggatcact gttggggact
3421tggaaggctg tatacattat aaagttgtta aatatgaaag gatcaaattt ttggtgattg
3481ccttaaagaa tgctgtggaa atatatgctt gggctcctaa accgtatcat aaattcatgg
3541catttaagtc ttttgcagat ctccagcaca agcctctgct agttgatctc acggtagaag
3601aaggtcaaag attaaaggtt atttttggtt cacacactgg tttccatgta attgatgttg
3661attcaggaaa ctcttatgat atctacatac catctcatat tcagggcaat atcactcctc
3721atgctattgt catcttgcct aaaacagatG GAATGGAAAT GCTTGTTTGC TATGAGGATG
3781AGGGGGTGTA TGTAAACACC TATGGCCGGA TAACTAAGGA TGTGGTGCTC CAATGGGGAG
3841AAATGCCCAC GTCTGTGGCC TACATTCATT CCAATCAGAT AATGGGCTGG GGCGAGAAAG
3901CTATTGAGAT CCGGTCAGTG GAAACAGGAC ATTTGGATGG AGTATTTATG CATAAGCGAG
3961CTCAAAGGTT AAAGTTTCTA TGTGAAAGAA ATGATAAGGT ATTTTTTGCA TCCGTGCGAT
4021CTGGAGGAAG TAGCCAAGTG TTTTTCATGA CCCTCAACAG AAATTCCATG ATGAACTGGA
4081AGGGTGGGCG CGCCGACCCA GCTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
4141CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA TTGAAAGTAT
4201TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA CACGTCCGAG TCATCCTGCG
4261GACACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)

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