Construct: ORF ccsbBroad304_02255

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002304.1_s304c1, BRDN0000410396
Derived from:
ccsbBroadEn_02255
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
JAKMIP2 (9832)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02255
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9832 JAKMIP2 janus kinase and microtubul... NM_014790.5 100% 100%
2 human 9832 JAKMIP2 janus kinase and microtubul... NM_001270941.2 97.7% 97.3% 2413_2414delTTinsAG;2416_2416delCinsAACCGAAAACA;2419_2460delinsGA
3 human 9832 JAKMIP2 janus kinase and microtubul... NM_001270934.2 95.2% 94.7% (many diffs)
4 human 9832 JAKMIP2 janus kinase and microtubul... XM_017010098.2 92.9% 92.4% (many diffs)
5 human 9832 JAKMIP2 janus kinase and microtubul... NM_001282282.2 92.6% 92.1% (many diffs)
6 mouse 76217 Jakmip2 janus kinase and microtubul... NM_001163637.1 88.4% 96.6% (many diffs)
7 mouse 76217 Jakmip2 janus kinase and microtubul... XM_006526337.3 87.9% 96.2% (many diffs)
8 mouse 76217 Jakmip2 janus kinase and microtubul... XM_011247034.2 85.8% 94% (many diffs)
9 mouse 76217 Jakmip2 janus kinase and microtubul... XM_006526338.3 85.3% 93.7% (many diffs)
10 mouse 76217 Jakmip2 janus kinase and microtubul... XM_006526340.3 64.9% 71.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2496
ORF length:
2430
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc caagaaaggg cgaaataagg gcgagaagcc cgaggcactc attgttgccc
121ttcaagctgc caatgaagac ctcaggacca agctcacaga cattcagata gagctgcatc
181aagagaagtc caaggtatca aagcttgaaa gagagaagac tcaagaagcg aagaggattc
241gtgagctgga gcagcgcaag cacacggtgc tggtgacaga actcaaagcc aagctccatg
301aggagaagat gaaggagctg caggctgtga gggagaacct tatcaagcag cacgagcagg
361aaatgtcaag gacggtgaag gtacgtgatg gagagatcca gaggctcaag tctgctctct
421gtgctctccg cgacggcagc agtgacaaag taaggacagc gctcaccatt gaggcccggg
481aggaggcccg gaaactgttt gacacagagc gccttaagct cttacaggaa attgcggacc
541tgaaaacggc caagaagcag gtggacgagg ctctgagcaa tatgatccaa gcagataaaa
601tcaaggctgg ggaccttcgg agtgagcatc agtcccacca agaagccatc tcgaagatca
661agtgggagtc ggagcgggat attcggaggc tgatggatga aatcaaagcc aaggacagga
721tcatcttttc cctggaaaag gaactggaga cccagacagg ctatgtacag aaactccaac
781ttcagaagga ggctttggac gaacaactct ttctggtcaa ggaggctgag tgcaacatga
841gcagcccaaa acgagaaatt ccaggaaggg caggtgatgg ttccgaacac tgcagcagtc
901ctgatttgcg aagaaatcaa aagagaatag ctgaattgaa tgccactata agaaaattag
961aagacaggaa taccttgctt ggagatgaac gaaatgaact gttaaaacgt gtgcgggaaa
1021ccgaaaagca atgtaaacct ctcctggaaa ggaacaagtg cctcgccaag agaaacgatg
1081aactgatggt gtccttgcag cgcatggaag aaaaactaaa agccgttacc aaggaaaatt
1141cagaaatgag agaaaaaata acatcccatc cacccctgaa gaaattaaaa tctctgaatg
1201acctcgacca agctaatgaa gaacaagaaa cagagtttct aaaacttcag gtcattgagc
1261aacagaacat tattgatgag ctcacaaggg accgagaaaa gctcatccgt agaagaaagc
1321atagaagaag ttccaagcca attaagaggc ctgttttgga cccgtttatt ggctatgatg
1381aggactctat ggattcagag acatcatcca tggcctcatt tagaacagac agaacaccag
1441ctactcctga tgatgacttg gatgaaagtt tagcagctga agaatctgaa ctaagatttc
1501gacaattaac aaaagaatat caggccctcc aaagagcata tgccctccta caggagcaga
1561cgggaggcat catcgacgct gaacgagaag ccaaggctca agaacagctc caagcagagg
1621tgctaaggta taaagccaaa attgaagacc tggaagcgac tctggctcag aaagggcagg
1681attcacactg ggtagaagat aaacaacttt tcattaagag aaaccaggag cttttagaaa
1741agatagaaaa acaggaggca gaaaatcacc ggttacaaca agaactacag gacgccagag
1801accagaatga gctgctggag tttcgaaacc tagagctaga agagagagag agacgatccc
1861ctccatttaa tctccaaatt cacccattct cagatggtgt gagtgctcta cagatctact
1921gtatgaaaga aggtgttaag gatgtgaaca tccctgatct cataaagcag cttgatatct
1981tgggtgataa tgggaattta agaaatgaag aacaagtggc cataattcag gccagcactg
2041tgctgtccct ggcagagaag tggatccagc agattgaagg agctgaggct gccctacacc
2101agaaaatgat ggaattggaa agtgacatgg aacagttctg caaaataaaa ggctatctgg
2161aggaagaact agactacaga aaacaagctc ttgaccaagc atatatgaga atccaggaac
2221tagaagctac tttgtacaat gctctacagc aagaaactgt tatcaagttt ggtgaattat
2281taagtgaaaa acagcaagag gagctgagga cggcagtaga aaagttacgg cggcaaatgc
2341tgaggaagag cagagagtat gactgtcaga ttcttcagga gagaatggag ctcttacagc
2401aagcccatca gagaattcgt gacttagaag ataaaacaga catccagaaa agacaaataa
2461aagacttaga agaaaagagt aaccgaaaac atggataccc aactttcttg tacaaagtgg
2521ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
2581ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

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