Construct: ORF ccsbBroad304_02752
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014498.1_s304c1, BRDN0000400321
- Derived from:
- ccsbBroadEn_02752
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRIM2 (23321)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_02752
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23321 | TRIM2 | tripartite motif containing 2 | NM_001130067.2 | 100% | 100% | |
| 2 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_017007944.1 | 100% | 100% | |
| 3 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_017007945.1 | 100% | 100% | |
| 4 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_017007948.2 | 100% | 100% | |
| 5 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_017007949.1 | 100% | 100% | |
| 6 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_017007950.1 | 100% | 100% | |
| 7 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_017007951.1 | 100% | 100% | |
| 8 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_017007952.1 | 100% | 100% | |
| 9 | human | 23321 | TRIM2 | tripartite motif containing 2 | NM_001351056.2 | 99.4% | 99.4% | 1870_1881del |
| 10 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_006714160.1 | 99.4% | 99.4% | 1870_1881del |
| 11 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_006714161.1 | 99.4% | 99.4% | 1870_1881del |
| 12 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_006714162.1 | 99.4% | 99.4% | 1870_1881del |
| 13 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_011531795.1 | 99.4% | 99.4% | 1870_1881del |
| 14 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_011531796.3 | 99.4% | 99.4% | 1870_1881del |
| 15 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_017007947.1 | 97.7% | 97.7% | 1_51del |
| 16 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_017007946.2 | 97.6% | 97.6% | 1_54del |
| 17 | human | 23321 | TRIM2 | tripartite motif containing 2 | NM_001351055.2 | 97.2% | 97.2% | 1_51del;1921_1932del |
| 18 | human | 23321 | TRIM2 | tripartite motif containing 2 | NM_001351054.2 | 97.1% | 97.1% | 1_54del;1924_1935del |
| 19 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_017007943.1 | 96.6% | 96.6% | 1_78del |
| 20 | human | 23321 | TRIM2 | tripartite motif containing 2 | NM_015271.5 | 96.4% | 96.4% | 1_81del |
| 21 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_006714158.1 | 96.1% | 96.1% | 1_78del;1948_1959del |
| 22 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_006714157.1 | 96% | 96% | 1_81del;1951_1962del |
| 23 | human | 23321 | TRIM2 | tripartite motif containing 2 | NM_001351057.2 | 83.1% | 83.1% | 0_1ins375 |
| 24 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_017007955.1 | 83.1% | 83.1% | 0_1ins375 |
| 25 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_006714165.3 | 82.7% | 82.7% | 0_1ins375;1495_1506del |
| 26 | human | 23321 | TRIM2 | tripartite motif containing 2 | XM_017007953.2 | 82.7% | 82.7% | 0_1ins375;1495_1506del |
| 27 | human | 23321 | TRIM2 | tripartite motif containing 2 | NM_001302694.1 | 17.4% | 16.6% | (many diffs) |
| 28 | human | 23321 | TRIM2 | tripartite motif containing 2 | NM_001302693.1 | 17.2% | 16.4% | (many diffs) |
| 29 | human | 23321 | TRIM2 | tripartite motif containing 2 | NM_001302692.1 | 17.2% | 16.4% | (many diffs) |
| 30 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | NM_001271726.1 | 90.9% | 99.1% | (many diffs) |
| 31 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | NM_001271727.1 | 90.9% | 99.1% | (many diffs) |
| 32 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | NM_001271728.1 | 90.9% | 99.1% | (many diffs) |
| 33 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_017319814.1 | 90.9% | 99.1% | (many diffs) |
| 34 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_011240300.2 | 90.4% | 98.6% | (many diffs) |
| 35 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_011240301.2 | 90.4% | 98.6% | (many diffs) |
| 36 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_011240302.1 | 90.4% | 98.6% | (many diffs) |
| 37 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_011240303.2 | 90.4% | 98.6% | (many diffs) |
| 38 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_011240304.2 | 90.4% | 98.6% | (many diffs) |
| 39 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | NM_030706.3 | 88.9% | 96.9% | (many diffs) |
| 40 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_011240299.2 | 88.4% | 96.4% | (many diffs) |
| 41 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_011240298.2 | 88.3% | 96.3% | (many diffs) |
| 42 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_017319813.1 | 88.3% | 96.3% | (many diffs) |
| 43 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | NM_001271725.1 | 87.8% | 95.8% | (many diffs) |
| 44 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_011240297.2 | 87.8% | 95.8% | (many diffs) |
| 45 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_011240296.1 | 87.4% | 95.3% | (many diffs) |
| 46 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_017319815.1 | 56.6% | 62.6% | (many diffs) |
| 47 | mouse | 80890 | Trim2 | tripartite motif-containing 2 | XM_011240305.1 | 31% | 31.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2298
- ORF length:
- 2232
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc cagtgaaggc accaacatcc caagtcctgt ggtgcgccag attgacaagc 121 agtttctgat ttgcagtata tgcctggaac ggtacaagaa tcccaaggtt ctcccctgtc 181 tgcacacttt ctgcgagagg tgcctgcaga actacattcc tgcccacagt ttaaccctct 241 cctgcccagt gtgccgccag acctccatcc tgcccgagaa aggggtggcc gcgctccaga 301 acaatttctt catcacaaac ctgatggacg tgctgcagcg aactccaggc agcaacgctg 361 aggagtcttc catcctggag acagtcactg ctgtggctgc gggaaagcct ctctcttgcc 421 caaaccacga tgggaatgtg atggaatttt actgccagtc ctgtgagact gccatgtgtc 481 gggagtgcac ggagggggag cacgcagagc accccacagt tccactcaag gatgtggtgg 541 aacagcacaa ggcctcgctc caggtccagc tggatgctgt caacaaaagg ctcccagaaa 601 tagattctgc tcttcagttc atctctgaaa tcattcatca gttaaccaac caaaaggcca 661 gcatcgtgga tgacattcat tccacctttg atgagctcca gaagacttta aatgtgcgca 721 agagtgtgct gcttatggaa ttggaggtca actatggcct caaacacaaa gtcctccagt 781 cgcagctgga tactctgctc caggggcagg agagcattaa gagctgcagc aacttcacag 841 cgcaggccct caaccatggc acggagaccg aggtcctact ggtgaagaag cagatgagcg 901 agaagctgaa cgagctggcc gaccaggact tccccttgca cccgcgggag aacgaccagc 961 tggatttcat cgtggaaacc gaggggctga agaagtccat ccacaacctc gggacgatct 1021 taaccaccaa cgccgttgcc tcagagacag tggccacggg cgaggggctg cggcagacca 1081 tcatcgggca gcccatgtcc gtcaccatca ccaccaagga caaagacggt gagctgtgca 1141 aaaccggcaa cgcctacctc accgccgaac tgagcacccc cgacgggagc gtggcagacg 1201 gggagatcct ggacaacaag aacggcacct atgagttttt gtacactgtc cagaaggaag 1261 gggactttac cctgtctctg agactctatg accagcacat ccgaggcagc ccgtttaagc 1321 tgaaagtgat ccgatccgct gatgtgtctc ccaccacaga aggcgtgaag aggcgcgtta 1381 agtccccggg gagcggccac gtcaagcaga aagctgtgaa aagacccgca agcatgtaca 1441 gcactggaaa acgaaaagag aatcccatcg aagacgattt gatctttcga gtgggtacca 1501 aaggaagaaa taaaggagag tttacaaatc ttcagggggt agctgcatct acaaatggaa 1561 agatattaat tgcagacagt aacaaccaat gtgtgcagat attttccaat gatggccagt 1621 tcaaaagtcg ttttggcata cggggacgct ctccggggca gctgcagcgg cccacaggag 1681 tggctgtaca tcccagtggg gacataatca ttgccgatta tgataataaa tgggtcagca 1741 ttttctcctc cgatgggaaa tttaagacaa aaattggatc aggaaagctg atgggaccca 1801 aaggagtttc tgtggaccgc aatgggcaca ttattgttgt ggacaacaag gcgtgctgcg 1861 tgtttatctt ccagccaaac gggaaaatag tcaccaggtt tggtagccga ggaaatgggg 1921 acaggcagtt tgcaggtccc cattttgcag ctgtaaatag caataatgag attattatta 1981 cagatttcca taatcattct gtcaaggtgt ttaatcagga aggagaattc atgttgaagt 2041 ttggctcaaa tggagaagga aatgggcagt ttaatgctcc aacaggtgta gcagtggatt 2101 caaatggaaa catcattgtg gccgactggg gaaacagcag gatccaggtt tttgatggga 2161 gtggatcatt tttgtcctac attaacacat ctgctgaccc actctatggc ccccaaggcc 2221 tggccctaac ttcagatggt catgttgtgg ttgcagactc tggaaatcac tgtttcaaag 2281 tctatcgata cttacagtac ccaactttct tgtacaaagt ggttggtaag cctatcccta 2341 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 2401 agtcgacaat caacctctgg atta