Construct: ORF ccsbBroadEn_02752

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014498.1_s300c1, BRDN0000386591
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRIM2 (23321)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23321 TRIM2 tripartite motif containing 2 NM_001130067.2 100% 100%
2 human 23321 TRIM2 tripartite motif containing 2 XM_017007944.1 100% 100%
3 human 23321 TRIM2 tripartite motif containing 2 XM_017007945.1 100% 100%
4 human 23321 TRIM2 tripartite motif containing 2 XM_017007948.2 100% 100%
5 human 23321 TRIM2 tripartite motif containing 2 XM_017007949.1 100% 100%
6 human 23321 TRIM2 tripartite motif containing 2 XM_017007950.1 100% 100%
7 human 23321 TRIM2 tripartite motif containing 2 XM_017007951.1 100% 100%
8 human 23321 TRIM2 tripartite motif containing 2 XM_017007952.1 100% 100%
9 human 23321 TRIM2 tripartite motif containing 2 NM_001351056.2 99.4% 99.4% 1870_1881del
10 human 23321 TRIM2 tripartite motif containing 2 XM_006714160.1 99.4% 99.4% 1870_1881del
11 human 23321 TRIM2 tripartite motif containing 2 XM_006714161.1 99.4% 99.4% 1870_1881del
12 human 23321 TRIM2 tripartite motif containing 2 XM_006714162.1 99.4% 99.4% 1870_1881del
13 human 23321 TRIM2 tripartite motif containing 2 XM_011531795.1 99.4% 99.4% 1870_1881del
14 human 23321 TRIM2 tripartite motif containing 2 XM_011531796.3 99.4% 99.4% 1870_1881del
15 human 23321 TRIM2 tripartite motif containing 2 XM_017007947.1 97.7% 97.7% 1_51del
16 human 23321 TRIM2 tripartite motif containing 2 XM_017007946.2 97.6% 97.6% 1_54del
17 human 23321 TRIM2 tripartite motif containing 2 NM_001351055.2 97.2% 97.2% 1_51del;1921_1932del
18 human 23321 TRIM2 tripartite motif containing 2 NM_001351054.2 97.1% 97.1% 1_54del;1924_1935del
19 human 23321 TRIM2 tripartite motif containing 2 XM_017007943.1 96.6% 96.6% 1_78del
20 human 23321 TRIM2 tripartite motif containing 2 NM_015271.5 96.4% 96.4% 1_81del
21 human 23321 TRIM2 tripartite motif containing 2 XM_006714158.1 96.1% 96.1% 1_78del;1948_1959del
22 human 23321 TRIM2 tripartite motif containing 2 XM_006714157.1 96% 96% 1_81del;1951_1962del
23 human 23321 TRIM2 tripartite motif containing 2 NM_001351057.2 83.1% 83.1% 0_1ins375
24 human 23321 TRIM2 tripartite motif containing 2 XM_017007955.1 83.1% 83.1% 0_1ins375
25 human 23321 TRIM2 tripartite motif containing 2 XM_006714165.3 82.7% 82.7% 0_1ins375;1495_1506del
26 human 23321 TRIM2 tripartite motif containing 2 XM_017007953.2 82.7% 82.7% 0_1ins375;1495_1506del
27 human 23321 TRIM2 tripartite motif containing 2 NM_001302694.1 17.4% 16.6% (many diffs)
28 human 23321 TRIM2 tripartite motif containing 2 NM_001302693.1 17.2% 16.4% (many diffs)
29 human 23321 TRIM2 tripartite motif containing 2 NM_001302692.1 17.2% 16.4% (many diffs)
30 mouse 80890 Trim2 tripartite motif-containing 2 NM_001271726.1 90.9% 99.1% (many diffs)
31 mouse 80890 Trim2 tripartite motif-containing 2 NM_001271727.1 90.9% 99.1% (many diffs)
32 mouse 80890 Trim2 tripartite motif-containing 2 NM_001271728.1 90.9% 99.1% (many diffs)
33 mouse 80890 Trim2 tripartite motif-containing 2 XM_017319814.1 90.9% 99.1% (many diffs)
34 mouse 80890 Trim2 tripartite motif-containing 2 XM_011240300.2 90.4% 98.6% (many diffs)
35 mouse 80890 Trim2 tripartite motif-containing 2 XM_011240301.2 90.4% 98.6% (many diffs)
36 mouse 80890 Trim2 tripartite motif-containing 2 XM_011240302.1 90.4% 98.6% (many diffs)
37 mouse 80890 Trim2 tripartite motif-containing 2 XM_011240303.2 90.4% 98.6% (many diffs)
38 mouse 80890 Trim2 tripartite motif-containing 2 XM_011240304.2 90.4% 98.6% (many diffs)
39 mouse 80890 Trim2 tripartite motif-containing 2 NM_030706.3 88.9% 96.9% (many diffs)
40 mouse 80890 Trim2 tripartite motif-containing 2 XM_011240299.2 88.4% 96.4% (many diffs)
41 mouse 80890 Trim2 tripartite motif-containing 2 XM_011240298.2 88.3% 96.3% (many diffs)
42 mouse 80890 Trim2 tripartite motif-containing 2 XM_017319813.1 88.3% 96.3% (many diffs)
43 mouse 80890 Trim2 tripartite motif-containing 2 NM_001271725.1 87.8% 95.8% (many diffs)
44 mouse 80890 Trim2 tripartite motif-containing 2 XM_011240297.2 87.8% 95.8% (many diffs)
45 mouse 80890 Trim2 tripartite motif-containing 2 XM_011240296.1 87.4% 95.3% (many diffs)
46 mouse 80890 Trim2 tripartite motif-containing 2 XM_017319815.1 56.6% 62.6% (many diffs)
47 mouse 80890 Trim2 tripartite motif-containing 2 XM_011240305.1 31% 31.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2298
ORF length:
2232
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CAGTGAAGGC ACCAACATCC CAAGTCCTGT GGTGCGCCAG ATTGACAAGC
121AGTTTCTGAT TTGCAGTATA TGCCTGGAAC GGTACAAGAA TCCCAAGGTT CTCCCCTGTC
181TGCACACTTT CTGCGAGAGG TGCCTGCAGA ACTACATTCC TGCCCACAGT TTAACCCTCT
241CCTGCCCAGT GTGCCGCCAG ACCTCCATCC TGCCCGAGAA AGGGGTGGCC GCGCTCCAGA
301ACAATTTCTT CATCACAAAC CTGATGGACG TGCTGCAGCG AACTCCAGGC AGCAACGCTG
361AGGAGTCTTC CATCCTGGAG ACAGTCACTG CTGTGGCTGC GGGAAAGCCT CTCTCTTGCC
421CAAACCACGA TGGGAATGTG ATGGAATTTT ACTGCCAGTC CTGTGAGACT GCCATGTGTC
481GGGAGTGCAC GGAGGGGGAG CACGCAGAGC ACCCCACAGT TCCACTCAAG GATGTGGTGG
541AACAGCACAA GGCCTCGCTC CAGGTCCAGC TGGATGCTGT CAACAAAAGG CTCCCAGAAA
601TAGATTCTGC TCTTCAGTTC ATCTCTGAAA TCATTCATCA GTTAACCAAC CAAAAGGCCA
661GCATCGTGGA TGACATTCAT TCCACCTTTG ATGAGCTCCA GAAGACTTTA AATGTGCGCA
721AGAGTGTGCT GCTTATGGAA TTGGAGGTCA ACTATGGCCT CAAACACAAA GTCCTCCAGT
781CGCAGCTGGA TACTCTGCTC CAGGGGCAGG AGAGCATTAA GAGCTGCAGC AACTTCACAG
841CGCAGGCCCT CAACCATGGC ACGGAGACCG AGGTCCTACT GGTGAAGAAG CAGATGAGCG
901AGAAGCTGAA CGAGCTGGCC GACCAGGACT TCCCCTTGCA CCCGCGGGAG AACGACCAGC
961TGGATTTCAT CGTGGAAACC GAGGGGCTGA AGAAGTCCAT CCACAACCTC GGGACGATCT
1021TAACCACCAA CGCCGTTGCC TCAGAGACAG TGGCCACGGG CGAGGGGCTG CGGCAGACCA
1081TCATCGGGCA GCCCATGTCC GTCACCATCA CCACCAAGGA CAAAGACGGT GAGCTGTGCA
1141AAACCGGCAA CGCCTACCTC ACCGCCGAAC TGAGCACCCC CGACGGGAGC GTGGCAGACG
1201GGGAGATCCT GGACAACAAG AACGGCACCT ATGAGTTTTT GTACACTGTC CAGAAGGAAG
1261GGGACTTTAC CCTGTCTCTG AGACTCTATG ACCAGCACAT CCGAGGCAGC CCGTTTAAGC
1321TGAAAGTGAT CCGATCCGCT GATGTGTCTC CCACCACAGA AGGCGTGAAG AGGCGCGTTA
1381AGTCCCCGGG GAGCGGCCAC GTCAAGCAGA AAGCTGTGAA AAGACCCGCA AGCATGTACA
1441GCACTGGAAA ACGAAAAGAG AATCCCATCG AAGACGATTT GATCTTTCGA GTGGGTACCA
1501AAGGAAGAAA TAAAGGAGAG TTTACAAATC TTCAGGGGGT AGCTGCATCT ACAAATGGAA
1561AGATATTAAT TGCAGACAGT AACAACCAAT GTGTGCAGAT ATTTTCCAAT GATGGCCAGT
1621TCAAAAGTCG TTTTGGCATA CGGGGACGCT CTCCGGGGCA GCTGCAGCGG CCCACAGGAG
1681TGGCTGTACA TCCCAGTGGG GACATAATCA TTGCCGATTA TGATAATAAA TGGGTCAGCA
1741TTTTCTCCTC CGATGGGAAA TTTAAGACAA AAATTGGATC AGGAAAGCTG ATGGGACCCA
1801AAGGAGTTTC TGTGGACCGC AATGGGCACA TTATTGTTGT GGACAACAAG GCGTGCTGCG
1861TGTTTATCTT CCAGCCAAAC GGGAAAATAG TCACCAGGTT TGGTAGCCGA GGAAATGGGG
1921ACAGGCAGTT TGCAGGTCCC CATTTTGCAG CTGTAAATAG CAATAATGAG ATTATTATTA
1981CAGATTTCCA TAATCATTCT GTCAAGGTGT TTAATCAGGA AGGAGAATTC ATGTTGAAGT
2041TTGGCTCAAA TGGAGAAGGA AATGGGCAGT TTAATGCTCC AACAGGTGTA GCAGTGGATT
2101CAAATGGAAA CATCATTGTG GCCGACTGGG GAAACAGCAG GATCCAGGTT TTTGATGGGA
2161GTGGATCATT TTTGTCCTAC ATTAACACAT CTGCTGACCC ACTCTATGGC CCCCAAGGCC
2221TGGCCCTAAC TTCAGATGGT CATGTTGTGG TTGCAGACTC TGGAAATCAC TGTTTCAAAG
2281TCTATCGATA CTTACAGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
2341gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)