Construct: ORF ccsbBroad304_02872
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014856.1_s304c1, BRDN0000402353
- Derived from:
- ccsbBroadEn_02872
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARMC8 (25852)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_02872
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25852 | ARMC8 | armadillo repeat containing 8 | NM_014154.4 | 100% | 100% | |
| 2 | human | 25852 | ARMC8 | armadillo repeat containing 8 | NM_213654.3 | 100% | 100% | |
| 3 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XM_017006100.2 | 75.5% | 73.7% | (many diffs) |
| 4 | human | 25852 | ARMC8 | armadillo repeat containing 8 | NM_015396.6 | 57.2% | 55.9% | (many diffs) |
| 5 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XM_006713565.2 | 57.2% | 55.9% | (many diffs) |
| 6 | human | 25852 | ARMC8 | armadillo repeat containing 8 | NM_001363941.2 | 56% | 54.6% | (many diffs) |
| 7 | human | 25852 | ARMC8 | armadillo repeat containing 8 | NM_001363942.1 | 53% | 51.7% | (many diffs) |
| 8 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XM_006713566.4 | 53% | 51.7% | (many diffs) |
| 9 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XM_011512632.1 | 53% | 51.7% | (many diffs) |
| 10 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XM_024453441.1 | 52.5% | 51.2% | (many diffs) |
| 11 | human | 25852 | ARMC8 | armadillo repeat containing 8 | NM_001267041.2 | 51.5% | 50% | (many diffs) |
| 12 | human | 25852 | ARMC8 | armadillo repeat containing 8 | NM_001282342.2 | 48.3% | 47% | (many diffs) |
| 13 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XM_017006095.2 | 47.1% | 45.8% | (many diffs) |
| 14 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XM_024453442.1 | 47.1% | 45.8% | (many diffs) |
| 15 | human | 25852 | ARMC8 | armadillo repeat containing 8 | NM_001267042.3 | 46.1% | 44.7% | (many diffs) |
| 16 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XM_017006097.1 | 42.9% | 41.5% | (many diffs) |
| 17 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XM_017006098.2 | 42.9% | 41.5% | (many diffs) |
| 18 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XM_017006099.1 | 42.9% | 41.5% | (many diffs) |
| 19 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XR_001740086.1 | 22.8% | (many diffs) | |
| 20 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XR_001740087.2 | 22.8% | (many diffs) | |
| 21 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XR_002959505.1 | 18.2% | (many diffs) | |
| 22 | human | 25852 | ARMC8 | armadillo repeat containing 8 | XR_002959506.1 | 17.9% | (many diffs) | |
| 23 | mouse | 74125 | Armc8 | armadillo repeat containing 8 | NM_001166138.1 | 90.1% | 95.7% | (many diffs) |
| 24 | mouse | 74125 | Armc8 | armadillo repeat containing 8 | XM_006511515.3 | 58.9% | 61.7% | (many diffs) |
| 25 | mouse | 74125 | Armc8 | armadillo repeat containing 8 | XM_006511513.3 | 56.6% | 59.2% | (many diffs) |
| 26 | mouse | 74125 | Armc8 | armadillo repeat containing 8 | XM_006511511.3 | 55.3% | 57% | (many diffs) |
| 27 | mouse | 74125 | Armc8 | armadillo repeat containing 8 | NM_028768.3 | 52.7% | 54.3% | (many diffs) |
| 28 | mouse | 74125 | Armc8 | armadillo repeat containing 8 | XM_006511512.3 | 49.6% | 51.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1221
- ORF length:
- 1155
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga agtaacagct agcagtcgcc actatgttga caggctattt gaccctgatc 121 cccagaaagt tctacaaggt gtcatagaca tgaaaaatgc tgtaattgga aacaacaagc 181 agaaagccaa tctcattgtt ttaggagctg ttccaagatt gttgtacttg cttcagcaag 241 aaacctcaag cacagagctg aaaactgaat gtgcagtggt gttgggaagt cttgctatgg 301 gtactgaaaa caatgtcaag tctctactgg actgccatat tatccctgcc ttattgcaag 361 gactactgtc cccagacctg aagtttattg aagcttgcct ccgatgcctg cgtaccatct 421 tcaccagtcc tgtcactcca gaggagctac tgtatacaga tgccacagtg ataccacacc 481 tcatggcact gcttagcagg tcccgctata cccaggagta catctgtcag atcttctcac 541 actgctgtaa agggccagat catcaaacaa ttttatttaa ccacggtgca gttcagaata 601 ttgctcacct actaacctca ctgtcctaca aagttcgaat gcaagcactg aaatgtttct 661 cagttttagc ttttgaaaac ccccaggtat cgatgaccct ggtaaatgtt ttggttgatg 721 gagaattgtt accacagatt tttgtgaaga tgttacagag ggataagcct attgagatgc 781 agctcacatc agcaaaatgt ttaacttaca tgtgtagagc tggagcaatt cggacagatg 841 ataactgtat tgtattaaag acattacctt gtttggttcg aatgtgcagt aaggagagat 901 tactagagga gagagttgaa ggagctgaga cacttgccta tctgattgaa ccagatgttg 961 agctacagag aatcgctagc ataactgatc acctcattgc catgcttgct gattatttca 1021 agtatcccag ctcagtgagt gccatcactg atattaaaag gcttgatcat gatttaaaac 1081 atgctcacga actccgccag gctgcattca agctctatgc ctctcttgga gcaaatgatg 1141 aagacatccg gaagaaggtg agtctgggag aggggcgtcc cccagtcctg acagccagca 1201 ggcagggagt gacgtcaacc tgcccaactt tcttgtacaa agtggttggt aagcctatcc 1261 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 1321 ttaagtcgac aatcaacctc tggatta