Construct: ORF ccsbBroad304_05008

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003649.1_s304c1, BRDN0000400941
Derived from:
ccsbBroadEn_05008
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF558 (148156)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05008
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 148156 ZNF558 zinc finger protein 558 NM_144693.3 100% 100%
2 human 148156 ZNF558 zinc finger protein 558 XM_024451386.1 100% 100%
3 human 148156 ZNF558 zinc finger protein 558 XM_024451387.1 100% 100%
4 human 148156 ZNF558 zinc finger protein 558 XM_024451388.1 100% 100%
5 human 148156 ZNF558 zinc finger protein 558 XM_024451389.1 100% 100%
6 human 148156 ZNF558 zinc finger protein 558 XM_024451390.1 100% 100%
7 human 148156 ZNF558 zinc finger protein 558 XM_024451391.1 100% 100%
8 human 148156 ZNF558 zinc finger protein 558 XM_024451392.1 100% 100%
9 human 148156 ZNF558 zinc finger protein 558 XM_024451393.1 100% 100%
10 human 148156 ZNF558 zinc finger protein 558 XM_024451394.1 100% 100%
11 human 148156 ZNF558 zinc finger protein 558 XM_024451395.1 100% 100%
12 human 148156 ZNF558 zinc finger protein 558 NM_001304350.1 82.3% 82.3% 0_1ins213
13 human 148156 ZNF558 zinc finger protein 558 XM_011527703.2 82.3% 82.3% 0_1ins213
14 human 148156 ZNF558 zinc finger protein 558 XM_017026370.1 82.3% 82.3% 0_1ins213
15 human 148156 ZNF558 zinc finger protein 558 XM_017026371.1 82.3% 82.3% 0_1ins213
16 human 148156 ZNF558 zinc finger protein 558 XM_017026372.1 82.3% 82.3% 0_1ins213
17 human 79230 ZNF557 zinc finger protein 557 NM_001044387.2 80% 73.2% (many diffs)
18 human 79230 ZNF557 zinc finger protein 557 NM_024341.3 80% 73.2% (many diffs)
19 human 79230 ZNF557 zinc finger protein 557 NM_001044388.2 78.5% 71.8% (many diffs)
20 mouse 72230 Zfp558 zinc finger protein 558 XM_017313605.1 55% 57.8% (many diffs)
21 mouse 72230 Zfp558 zinc finger protein 558 XM_017313606.1 55% 57.8% (many diffs)
22 mouse 72230 Zfp558 zinc finger protein 558 XM_017313607.1 55% 57.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1272
ORF length:
1206
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggctgtcatc ctgccctcga ctgctgctcc gtcttccctg ttcccagcct
121ctcagcaaaa aggacacaca cagggcggag agctggttaa tgagctcctg acaagctggc
181tacggggctt ggtaaccttc gaggatgtgg ccgtggagtt cacccaggag gagtgggcgt
241tgctggaccc tgcccaaagg acactgtaca gggatgtgat gctggagaac tgcaggaacc
301tggcctcact agggtgtcgt gttaataaac ccagtctgat atcccagttg gaacaagaca
361agaaggtggt gacagaggaa agaggaattc taccaagcac ctgtccagat ttggagactc
421tacttaaagc caaatggtta actcctaaga agaatgtttt cagaaaagaa cagtctaaag
481gtgtaaaaac ggaaagaagt catcgtggag tgaaactcaa tgaatgtaat cagtgtttta
541aagtcttcag cacgaaatct aacctaactc agcacaagag aattcatact ggagaaaaac
601cctatgactg tagtcaatgt gggaagtcct tcagtagcag atcttacctt actattcata
661agagaatcca taatggggag aaaccctatg aatgcaatca ctgtgggaaa gcatttagtg
721atccctcatc ccttagactg catttgagaa ttcacactgg agaaaaaccc tatgaatgta
781accagtgttt tcacgttttc cgcaccagtt gtaacctcaa aagccacaag aggattcaca
841cgggggagaa tcaccatgaa tgtaatcagt gtggaaaagc tttcagcaca aggtcctctc
901tcactgggca caatagcatt catacagggg agaaacctta tgaatgtcac gattgtggga
961aaaccttcag gaagagctcc tatctgacac agcacgtaag aactcatact ggagaaaaac
1021cctatgaatg taacgagtgt gggaaatcct tcagcagtag cttttctctt actgtgcaca
1081agagaataca taccggagag aaaccctacg agtgcagtga ctgtggaaaa gcctttaata
1141atctctcagc tgtgaagaaa cacttaagaa ctcacactgg agaaaaaccc tatgaatgta
1201atcattgtgg gaaatccttc acaagtaact cctatctttc tgtgcacaag agaatacata
1261atagatggat atgcccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
1321tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
1381caatcaacct ctggatta

Download FASTA (ORF) (Full)