Construct: ORF ccsbBroad304_09689
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013184.1_s304c1, BRDN0000409619
- Derived from:
- ccsbBroadEn_09689
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF595 (152687)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_09689
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 152687 | ZNF595 | zinc finger protein 595 | NM_182524.4 | 99.8% | 99.6% | 348C>T;895C>A;1189A>G |
| 2 | human | 152687 | ZNF595 | zinc finger protein 595 | NM_001286052.1 | 94.9% | 94.7% | (many diffs) |
| 3 | human | 152687 | ZNF595 | zinc finger protein 595 | XM_011513398.2 | 94.9% | 94.7% | (many diffs) |
| 4 | human | 152687 | ZNF595 | zinc finger protein 595 | NM_001286053.1 | 71.6% | 71.4% | 0_1ins549;346C>A;640A>G |
| 5 | human | 152687 | ZNF595 | zinc finger protein 595 | NM_001286054.1 | 71.6% | 71.4% | 0_1ins549;346C>A;640A>G |
| 6 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_003441.4 | 63.2% | 54.2% | (many diffs) |
| 7 | human | 255403 | ZNF718 | zinc finger protein 718 | NM_001039127.6 | 63.2% | 54.6% | (many diffs) |
| 8 | human | 7700 | ZNF141 | zinc finger protein 141 | XM_017008591.2 | 57.9% | 49.5% | (many diffs) |
| 9 | human | 7700 | ZNF141 | zinc finger protein 141 | XM_011513562.3 | 54% | 46.2% | (many diffs) |
| 10 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_001348277.2 | 52.4% | 44.2% | (many diffs) |
| 11 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_001348278.2 | 27.6% | 23.3% | (many diffs) |
| 12 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_001348280.2 | 12.6% | 10.4% | (many diffs) |
| 13 | human | 107986244 | LOC107986244 | zinc finger protein 141-like | XM_017008889.1 | 10.4% | 9.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2010
- ORF length:
- 1944
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga actcgtaaca ttcagggatg tggccataga attctcccct gaagagtgga 121 aatgtctgga ccctgcccag cagaatttgt atagagatgt gatgttggag aactacagga 181 acctggtctc cctgggtttt gtgatctcta acccagacct ggtcacctgt ctggagcaaa 241 taaaagagcc ctgcaatttg aagatacatg agacagcagc caaaccccca gctatatgtt 301 ctcctttcag ccaagacctt tcaccagtgc aggggataga agattcattc cacaaactta 361 tactgaaaag atacgagaaa tgtggacatg agaatttaca attaagaaaa ggttgtaaac 421 gtgtgaatga gtgtaaggtg cagaaaggag ttaataatgg agtttaccag tgcttgtcaa 481 ctacccagag caaaatattt caatgtaata catgtgttaa agtttttagt aaattttcaa 541 attcaaacaa acataagata agacatactg gagagaaacc ctttaaatgt acagaatgtg 601 gcagatcgtt ttacatgtca cacctaactc aacatacagg aattcatgct ggagagaaac 661 cctacaaatg tgaaaaatgt ggcaaagcct ttaataggtc cacatcactt agtaaacata 721 agagaattca tactggagag aaaccctaca catgtgaaga atgtggcaaa gcctttagac 781 ggtccacagt tctgaacgaa cataagaaaa ttcatactgg agagaaaccc tacaaatgtg 841 aagaatgtgg caaagccttt acaaggtcca caacactgaa tgaacacaag aaaattcata 901 ctggagagaa accctacaaa tgtaaagaat gtggcaaagc ctttagatgg tccacaagca 961 tgaatgaaca taagaatatt catactggag agaaacccta caaatgtaaa gaatgtggca 1021 aagcctttag acagtccagg agcctgaatg aacataaaaa tattcatact ggcgaaaaac 1081 cctacacatg tgaaaaatgt ggcaaagctt ttaaccaatc ctcaagtctt attatacaca 1141 ggagcattca ttctgaacaa aaactttaca aatgtgaaga atgtggcaaa gcctttactt 1201 ggtcctcatc ccttaataaa cataagagaa ttcatactgg agagaaaccc tacgcatgtg 1261 aagaatgtgg caaagctttt tataggtcct cacaccttgc taaacataag agaattcata 1321 ctggagagaa accctacacg tgcgaagaat gtggcaaagc ttttaaccaa tcctcaactc 1381 ttatattaca caagagaatc cattctgggc aaaaacctta caaatgtgaa gaatgtggca 1441 aagcctttac acggtccaca acactgaacg aacataagaa aattcatact ggcgagaaac 1501 cctacaaatg tgaagaatgt ggcaaagctt tcatatggtc cgcaagcctg aatgaacata 1561 agaatattca tactggagag aaaccctaca aatgtaaaga atgtggcaaa gcttttaacc 1621 aatcctcagg ccttattata cacaggagca ttcattctga acaaaaactt tacaaatgtg 1681 aagaatgtgg caaagccttt actcggtcca cagccctgaa tgaacataag aaaattcatt 1741 ctggagagaa accctacaaa tgcaaagaat gtggcaaagc ctataactta tcctcaaccc 1801 ttactaaaca taagagaatt catactggag agaaaccctt cacatgtgaa gaatgtggca 1861 aagccttcaa ttggtcctca tcccttacta aacataagat aattcatact ggagagaaat 1921 cctacaaatg tgaagaatgt ggcaaagctt ttaatcggcc ctcaaccctt actgtacaca 1981 agcgaattca tactggcaag gaacatagtt gcccaacttt cttgtacaaa gtggttggta 2041 agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc 2101 ggtggcgcgt taagtcgaca atcaacctct ggatta