Transcript: Human NM_001286054.1

Homo sapiens zinc finger protein 595 (ZNF595), transcript variant 4, mRNA.

Source:
NCBI, updated 2018-06-30
Taxon:
Homo sapiens (human)
Gene:
ZNF595 (152687)
Length:
3012
CDS:
855..2252

Additional Resources:

NCBI RefSeq record:
NM_001286054.1
NBCI Gene record:
ZNF595 (152687)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001286054.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000017626 CCACAACACTGAACGAACATA pLKO.1 1696 CDS 100% 5.625 4.500 N ZNF595 n/a
2 TRCN0000415961 AGAATATTGCTCCCATATAAA pLKO_005 2307 3UTR 100% 15.000 10.500 N ZNF595 n/a
3 TRCN0000017624 CCAATCCTCAACTCTTATATT pLKO.1 1607 CDS 100% 15.000 10.500 N ZNF595 n/a
4 TRCN0000430571 GTATCTATTCATGGCTTATTT pLKO_005 2385 3UTR 100% 15.000 10.500 N ZNF595 n/a
5 TRCN0000414773 ATTACACACAGTCCAGTTATA pLKO_005 2488 3UTR 100% 13.200 9.240 N ZNF595 n/a
6 TRCN0000017623 CCACATCACTTAGTAAACATA pLKO.1 940 CDS 100% 5.625 3.938 N ZNF595 n/a
7 TRCN0000017625 CCAATCCTCAAGTCTTATTAT pLKO.1 1355 CDS 100% 15.000 9.000 N ZNF595 n/a
8 TRCN0000096537 CTGGAGAGAAACCCTACAAAT pLKO.1 889 CDS 100% 13.200 6.600 Y Zfp934 n/a
9 TRCN0000235358 CTGGAGAGAAACCCTACAAAT pLKO_005 889 CDS 100% 13.200 6.600 Y 2810408B13Rik n/a
10 TRCN0000244342 CTGGAGAGAAACCCTACAAAT pLKO_005 889 CDS 100% 13.200 6.600 Y EG668616 n/a
11 TRCN0000021908 TCAGGGATGTGGCCATAGAAT pLKO.1 221 5UTR 100% 5.625 2.813 Y ZNF765 n/a
12 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 500 5UTR 100% 4.950 2.475 Y ERAP2 n/a
13 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 501 5UTR 100% 13.200 6.600 Y LIAS n/a
14 TRCN0000148469 CTGGGTTCAAGCAATTCTCTT pLKO.1 2613 3UTR 100% 4.950 2.475 Y C16orf89 n/a
15 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 2778 3UTR 100% 5.625 2.813 Y KLHL30 n/a
16 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 2778 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001286054.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09689 pDONR223 100% 71.6% 71.4% None 0_1ins549;346C>A;640A>G n/a
2 ccsbBroad304_09689 pLX_304 0% 71.6% 71.4% V5 0_1ins549;346C>A;640A>G n/a
3 TRCN0000481244 ACCATTTTCTTCACCAGCCAGTGA pLX_317 14.2% 71.6% 71.4% V5 0_1ins549;346C>A;640A>G n/a
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