Construct: ORF ccsbBroad304_11020

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009364.1_s304c1, BRDN0000405630
Derived from:
ccsbBroadEn_11020
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCM1 (5108)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11020
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5108 PCM1 pericentriolar material 1 NM_001352659.1 100% 100%
2 human 5108 PCM1 pericentriolar material 1 NM_001352660.1 100% 100%
3 human 5108 PCM1 pericentriolar material 1 NM_001352643.2 34.9% 34.9% 476_477delACinsGT;1591_4545del
4 human 5108 PCM1 pericentriolar material 1 NM_001352654.2 33.5% 33.5% 476_477delACinsGT;783_784ins117;1474_4263del
5 human 5108 PCM1 pericentriolar material 1 NM_001352655.2 33.5% 33.5% 476_477delACinsGT;783_784ins117;1474_4263del
6 human 5108 PCM1 pericentriolar material 1 NM_001352656.2 33.5% 33.5% 476_477delACinsGT;783_784ins117;1474_4263del
7 human 5108 PCM1 pericentriolar material 1 NM_001352657.2 32.3% 32.3% 476_477delACinsGT;783_784ins117;1474_4428del
8 human 5108 PCM1 pericentriolar material 1 NM_001352658.2 32.3% 32.3% 476_477delACinsGT;783_784ins117;1474_4428del
9 human 5108 PCM1 pericentriolar material 1 NM_001352638.2 26.4% 26.4% 476_477delACinsGT;1591_6000del
10 human 5108 PCM1 pericentriolar material 1 XM_017013490.2 26.4% 26.4% 476_477delACinsGT;1591_6000del
11 human 5108 PCM1 pericentriolar material 1 XM_024447171.1 26.4% 26.4% 476_477delACinsGT;1591_6000del
12 human 5108 PCM1 pericentriolar material 1 NM_001352637.2 26.3% 26.3% 476_477delACinsGT;1591_6024del
13 human 5108 PCM1 pericentriolar material 1 XM_017013489.1 26.3% 26.3% 476_477delACinsGT;1591_6024del
14 human 5108 PCM1 pericentriolar material 1 NM_001352636.2 26.3% 26.3% 476_477delACinsGT;1591_6027del
15 human 5108 PCM1 pericentriolar material 1 XM_017013486.1 26.3% 26.2% 476_477delACinsGT;1591_6036del
16 human 5108 PCM1 pericentriolar material 1 NM_001315508.1 25.8% 25.8% 783_784ins117;1474_5580del
17 human 5108 PCM1 pericentriolar material 1 NM_001352642.2 25.8% 25.8% 476_477delACinsGT;783_784ins117;1474_5577del
18 human 5108 PCM1 pericentriolar material 1 XM_017013478.1 25.7% 25.7% 476_477delACinsGT;1591_6165del
19 human 5108 PCM1 pericentriolar material 1 NM_001352633.2 25.6% 25.6% 476_477delACinsGT;1591_6186del
20 human 5108 PCM1 pericentriolar material 1 NM_001352650.2 25.6% 25.6% 476_477delACinsGT;1591_6189del
21 human 5108 PCM1 pericentriolar material 1 NM_001352651.2 25.6% 25.6% 476_477delACinsGT;1591_6189del
22 human 5108 PCM1 pericentriolar material 1 XM_024447168.1 25.6% 25.6% 476_477delACinsGT;1591_6189del
23 human 5108 PCM1 pericentriolar material 1 NM_001352632.2 25.6% 25.5% 476_477delACinsGT;1591_6201del
24 human 5108 PCM1 pericentriolar material 1 XM_017013473.1 25.2% 25.2% 476_477delACinsGT;1591_6279del
25 human 5108 PCM1 pericentriolar material 1 XM_017013472.1 25.2% 25.2% 476_477delACinsGT;1591_6282del
26 human 5108 PCM1 pericentriolar material 1 XM_006716340.3 24.6% 24.6% 476_477delACinsGT;900_1088del;1780_6438del
27 human 5108 PCM1 pericentriolar material 1 XM_011544534.2 24.6% 24.6% 476_477delACinsGT;900_1088del;1780_6447del
28 human 5108 PCM1 pericentriolar material 1 XM_006716336.3 24.6% 24.6% 476_477delACinsGT;900_1088del;1780_6450del
29 human 5108 PCM1 pericentriolar material 1 XM_011544532.2 24.5% 24.5% 476_477delACinsGT;900_1088del;1780_6468del
30 human 5108 PCM1 pericentriolar material 1 XM_011544528.2 24.5% 24.5% 476_477delACinsGT;900_1088del;1780_6471del
31 human 5108 PCM1 pericentriolar material 1 XM_011544529.2 24.5% 24.5% 476_477delACinsGT;900_1088del;1780_6471del
32 human 5108 PCM1 pericentriolar material 1 XM_011544530.2 24.5% 24.5% 476_477delACinsGT;900_1088del;1780_6471del
33 human 5108 PCM1 pericentriolar material 1 XM_024447167.1 24.5% 24.5% 476_477delACinsGT;900_1088del;1780_6471del
34 human 5108 PCM1 pericentriolar material 1 NM_001352646.2 24.5% 24.5% 476_477delACinsGT;783_784ins117;1474_5883del
35 human 5108 PCM1 pericentriolar material 1 NM_001352647.2 24.5% 24.5% 476_477delACinsGT;783_784ins117;1474_5883del
36 human 5108 PCM1 pericentriolar material 1 XM_017013501.1 24.5% 24.5% 476_477delACinsGT;783_784ins117;1474_5883del
37 human 5108 PCM1 pericentriolar material 1 NM_001352648.2 24.5% 24.4% 476_477delACinsGT;783_784ins117;1474_5886del
38 human 5108 PCM1 pericentriolar material 1 NM_001352649.2 24.5% 24.4% 476_477delACinsGT;783_784ins117;1474_5886del
39 human 5108 PCM1 pericentriolar material 1 NM_001352641.2 24.4% 24.4% 476_477delACinsGT;783_784ins117;1474_5895del
40 human 5108 PCM1 pericentriolar material 1 NM_001352644.2 24.4% 24.4% 476_477delACinsGT;783_784ins117;1474_5907del
41 human 5108 PCM1 pericentriolar material 1 NM_001352645.2 24.4% 24.4% 476_477delACinsGT;783_784ins117;1474_5907del
42 human 5108 PCM1 pericentriolar material 1 XM_017013496.2 24.4% 24.4% 476_477delACinsGT;783_784ins117;1474_5907del
43 human 5108 PCM1 pericentriolar material 1 NM_001352640.2 24.4% 24.3% 476_477delACinsGT;783_784ins117;1474_5910del
44 human 5108 PCM1 pericentriolar material 1 NM_001352639.2 24.3% 24.3% 476_477delACinsGT;783_784ins117;1474_5919del
45 human 5108 PCM1 pericentriolar material 1 XM_017013493.1 24.3% 24.3% 476_477delACinsGT;783_784ins117;1474_5919del
46 human 5108 PCM1 pericentriolar material 1 XM_017013491.1 24.3% 24.3% 476_477delACinsGT;783_784ins117;1474_5922del
47 human 5108 PCM1 pericentriolar material 1 NM_001315507.2 23.8% 23.8% 476_477delACinsGT;783_784ins117;1474_6048del
48 human 5108 PCM1 pericentriolar material 1 NM_001352635.2 23.8% 23.8% 476_477delACinsGT;783_784ins117;1474_6051del
49 human 5108 PCM1 pericentriolar material 1 XM_024447169.1 23.8% 23.8% 476_477delACinsGT;783_784ins117;1474_6051del
50 human 5108 PCM1 pericentriolar material 1 XM_024447170.1 23.8% 23.8% 476_477delACinsGT;783_784ins117;1474_6051del
51 human 5108 PCM1 pericentriolar material 1 NM_001352652.2 23.7% 23.7% 476_477delACinsGT;783_784ins117;1474_6072del
52 human 5108 PCM1 pericentriolar material 1 NM_001352653.2 23.7% 23.7% 476_477delACinsGT;783_784ins117;1474_6072del
53 human 5108 PCM1 pericentriolar material 1 NM_006197.4 23.7% 23.7% 476_477delACinsGT;783_784ins117;1474_6072del
54 human 5108 PCM1 pericentriolar material 1 NM_001352634.2 23.7% 23.7% 476_477delACinsGT;783_784ins117;1474_6084del
55 human 5108 PCM1 pericentriolar material 1 XM_017013480.1 23.5% 23.4% 476_477delACinsGT;783_784ins117;1474_6141del
56 human 5108 PCM1 pericentriolar material 1 XM_017013481.1 23.5% 23.4% 476_477delACinsGT;783_784ins117;1474_6141del
57 human 5108 PCM1 pericentriolar material 1 NR_148032.2 16.8% (many diffs)
58 mouse 18536 Pcm1 pericentriolar material 1 XM_006509304.2 29.7% 29.9% (many diffs)
59 mouse 18536 Pcm1 pericentriolar material 1 XM_011242179.1 29.7% 29.9% (many diffs)
60 mouse 18536 Pcm1 pericentriolar material 1 XM_006509302.2 23.8% 24% (many diffs)
61 mouse 18536 Pcm1 pericentriolar material 1 XM_006509301.2 23.8% 24% (many diffs)
62 mouse 18536 Pcm1 pericentriolar material 1 XM_006509300.2 23.7% 23.9% (many diffs)
63 mouse 18536 Pcm1 pericentriolar material 1 XM_006509298.2 23.2% 23.4% (many diffs)
64 mouse 18536 Pcm1 pericentriolar material 1 XM_017312615.1 21.9% 22.2% (many diffs)
65 mouse 18536 Pcm1 pericentriolar material 1 XM_006509299.2 21.6% 21.8% (many diffs)
66 mouse 18536 Pcm1 pericentriolar material 1 NM_023662.3 21.4% 21.6% (many diffs)
67 mouse 18536 Pcm1 pericentriolar material 1 XR_001778411.1 16.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1656
ORF length:
1590
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc cacaggagga ggtccctttg aagatggcat gaatgatcag gatttaccaa
121actggagtaa tgagaatgtt gatgacaggc tcaacaatat ggattggggt gcccaacaga
181agaaagcaaa tagatcatca gaaaagaata agaaaaagtt tggtgtagaa agtgataaaa
241gagtaaccaa tgatatttct ccggagtcgt caccaggagt tggaaggcga agaacaaaga
301ctccacatac gttcccacac agtagataca tgagtcagat gtctgtccca gagcaggcag
361aattagagaa actgaaacag cggataaact tcagtgattt agatcagaga agcattggaa
421gtgattccca aggtagagca acagctgcta acaacaaacg tcagcttagt gaaaaccgaa
481agcccttcaa ctttttgcct atgcagatta atactaacaa gagcaaagat gcatctacaa
541gtcccccaaa cagagaaacg attggatcag cacagtgtaa agagttgttt gcttctgctt
601taagtaatga cctcttgcaa aactgtcagg tgtctgaaga agatgggagg ggagaacctg
661caatggagag cagccagatt gtaagcaggc ttgttcaaat tcgcgattat attactaaag
721ctagttccat gcgggaagat cttgtagaga aaaatgagag atctgctaat gttgagcgcc
781ttactcatct aatagatcac cttaaagaac aagagaagtc atatatgaaa tttcttaaaa
841aaatccttgc tagagaaaat gaggaggagg atgttcggac tatagattca gctgtgggat
901ctggttctgt agctgagagc acatcgctaa acatagatgt gcagtctgag gcttcagata
961ccacggccag agatcctcag caggagccta tggaagagat agaaaatttg aagaaacaac
1021atgatttatt aaaaagaatg ttacaacagc aggagcaact aagagctcta cagggacggc
1081aggctgcact tctagctctg caacataaag cagagcaagc tattgcagtg atggatgatt
1141ctgttgttgc agaaactgca ggtagcttat ctggcgtcag tatcacatct gaactaaatg
1201aagaattgaa tgacttaatt cagcgttttc ataatcagct tcgtgattct cagcctccag
1261ctgttccaga caatagaaga caggcagaaa gtctttcatt aactagggag gtttcccaga
1321gcaggaaacc atcagcttca gaacgtttac ctgatgagaa agtcgaactt tttagcaaaa
1381tgagagtgct acaggaaaag aaacaaaaaa tggacaaatt gcttggagaa cttcatacac
1441ttcgagatca gcatcttaac aattcatcat cctctccaca aaggagtgtc gatcagagaa
1501gtacttcagc tccctctgct tctgtaggct tggcaccggt tgtcaatgga gaatccaata
1561gcctcacatc atctgttcct tatcctactg cttctctagt atctcagaat gagagtgaaa
1621acgaaggcca cctcaatcca tctgaaaaac tccagtaccc aactttcttg tacaaagtgg
1681ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
1741ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)

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