Construct: ORF ccsbBroad304_12772

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012836.1_s304c1, BRDN0000407326
Derived from:
ccsbBroadEn_12772
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC10A7 (84068)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12772
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84068 SLC10A7 solute carrier family 10 me... NM_001317818.2 100% 100%
2 human 84068 SLC10A7 solute carrier family 10 me... NM_001317817.1 73.7% 71.7% (many diffs)
3 human 84068 SLC10A7 solute carrier family 10 me... XM_017008692.1 73.7% 71.7% (many diffs)
4 human 84068 SLC10A7 solute carrier family 10 me... XM_017008691.2 41.8% 42.2% 184_186delGAGinsCTT;189G>T;192_447delinsT
5 human 84068 SLC10A7 solute carrier family 10 me... NM_032128.4 39.2% 39.6% 184_186delGAGinsCTT;189G>T;192_477delinsT
6 human 84068 SLC10A7 solute carrier family 10 me... XM_017008690.2 38.2% 38.6% 184_186delGAGinsCTT;189G>T;192_489delinsT
7 human 84068 SLC10A7 solute carrier family 10 me... XM_017008689.1 34.6% 35% 184_186delGAGinsCTT;189G>T;192_540delinsT
8 human 84068 SLC10A7 solute carrier family 10 me... NM_001317816.2 19% 19.2% 184_186delGAGinsCTT;189G>T;192_981delinsT
9 human 84068 SLC10A7 solute carrier family 10 me... NM_001029998.6 18.3% 18.5% 184_186delGAGinsCTT;189G>T;192_1020delinsT
10 human 84068 SLC10A7 solute carrier family 10 me... XM_011532311.2 18% 18.2% 184_186delGAGinsCTT;189G>T;192_1035delinsT
11 human 84068 SLC10A7 solute carrier family 10 me... NM_001300842.3 17.4% 17.5% 184_186delGAGinsCTT;189G>T;192_1074delinsT
12 human 84068 SLC10A7 solute carrier family 10 me... XR_001741333.1 17.3% (many diffs)
13 human 84068 SLC10A7 solute carrier family 10 me... NR_133924.2 5.2% (many diffs)
14 human 84068 SLC10A7 solute carrier family 10 me... XR_001741332.2 5.1% (many diffs)
15 human 84068 SLC10A7 solute carrier family 10 me... XR_938780.3 5% (many diffs)
16 mouse 76775 Slc10a7 solute carrier family 10 (s... XM_017313009.1 31.9% 33.9% (many diffs)
17 mouse 76775 Slc10a7 solute carrier family 10 (s... XM_006531491.2 31% 32.9% (many diffs)
18 mouse 76775 Slc10a7 solute carrier family 10 (s... XM_006531489.1 23.3% 24.7% (many diffs)
19 mouse 76775 Slc10a7 solute carrier family 10 (s... XM_011248545.1 22.6% 24% (many diffs)
20 mouse 76775 Slc10a7 solute carrier family 10 (s... NM_001282108.1 18% 19.1% (many diffs)
21 mouse 76775 Slc10a7 solute carrier family 10 (s... NM_001009981.2 17.2% 18.2% (many diffs)
22 mouse 76775 Slc10a7 solute carrier family 10 (s... XM_006531488.1 16.4% 17.4% (many diffs)
23 mouse 76775 Slc10a7 solute carrier family 10 (s... NM_029736.2 15.7% 16.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
258
ORF length:
192
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag gctgctggag agaatgagga aagactggtt catggtcgga atagtgctgg
121cgatcgctgg agctaaactg gagccgtcca taggggtgaa tgggggacca ctgaagccag
181aaataactgt atcctacatt gctgttgcaa caatattctt taacagtgga ctatcattga
241aaacagagct tcttacttac ccaactttct tgtacaaagt ggttggtaag cctatcccta
301accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
361agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)