Transcript: Human XR_938780.3

PREDICTED: Homo sapiens solute carrier family 10 member 7 (SLC10A7), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC10A7 (84068)
Length:
3711
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_938780.3
NBCI Gene record:
SLC10A7 (84068)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_938780.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000152464 CCTCTCATCATTGGACAGATT pLKO.1 764 3UTR 100% 4.950 6.930 N SLC10A7 n/a
2 TRCN0000154194 CCACGTATAGAACTACGAGAA pLKO.1 2477 3UTR 100% 4.050 5.670 N SLC10A7 n/a
3 TRCN0000153300 GCCAACAATCAAGTCTTGGAT pLKO.1 1183 3UTR 100% 3.000 2.400 N SLC10A7 n/a
4 TRCN0000147553 GAGGCAGCTGCAATATTTAAT pLKO.1 620 3UTR 100% 15.000 10.500 N SLC10A7 n/a
5 TRCN0000149893 GAAATGAGGCAGCTGCAATAT pLKO.1 615 3UTR 100% 13.200 9.240 N SLC10A7 n/a
6 TRCN0000154292 GCCATGAGCATCTCTCTTTAA pLKO.1 1104 3UTR 100% 13.200 9.240 N SLC10A7 n/a
7 TRCN0000152650 GCCTGTTACATCCTGGAATTA pLKO.1 2299 3UTR 100% 13.200 9.240 N SLC10A7 n/a
8 TRCN0000157440 GACTGGTTCATGGTCGGAATA pLKO.1 254 3UTR 100% 10.800 7.560 N SLC10A7 n/a
9 TRCN0000180984 CCAGTGCTTTGGTGCATCTAA pLKO.1 417 3UTR 100% 5.625 3.938 N SLC10A7 n/a
10 TRCN0000157543 GCAGACACAGTGGCTATCATT pLKO.1 1022 3UTR 100% 5.625 3.938 N SLC10A7 n/a
11 TRCN0000150111 CTGAAGCCAGAAATAACTGTA pLKO.1 332 3UTR 100% 4.950 3.465 N SLC10A7 n/a
12 TRCN0000149358 GACCACTGAAGCCAGAAATAA pLKO.1 327 3UTR 100% 15.000 9.000 N SLC10A7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_938780.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12773 pDONR223 100% 15% None 1_226del;782_788delATTGTCC;792_3711del n/a
2 ccsbBroad304_12773 pLX_304 0% 15% V5 1_226del;782_788delATTGTCC;792_3711del n/a
3 TRCN0000471611 CAGCATACGTATGAGAGAGACTTT pLX_317 72.9% 15% V5 1_226del;782_788delATTGTCC;792_3711del n/a
4 ccsbBroadEn_16026 pDONR223 0% 12.4% None (many diffs) n/a
5 ccsbBroad304_16026 pLX_304 0% 12.4% V5 (many diffs) n/a
6 ccsbBroadEn_12772 pDONR223 100% 5% None (many diffs) n/a
7 ccsbBroad304_12772 pLX_304 0% 5% V5 (many diffs) n/a
8 TRCN0000481615 TGCCGATCACAAAGCTGGCGATTC pLX_317 100% 5% V5 (many diffs) n/a
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