Construct: ORF ccsbBroadEn_12772
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012836.1_s300c1, BRDN0000393435
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC10A7 (84068)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001317818.2 | 100% | 100% | |
| 2 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001317817.1 | 73.7% | 71.7% | (many diffs) |
| 3 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_017008692.1 | 73.7% | 71.7% | (many diffs) |
| 4 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_017008691.2 | 41.8% | 42.2% | 184_186delGAGinsCTT;189G>T;192_447delinsT |
| 5 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_032128.4 | 39.2% | 39.6% | 184_186delGAGinsCTT;189G>T;192_477delinsT |
| 6 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_017008690.2 | 38.2% | 38.6% | 184_186delGAGinsCTT;189G>T;192_489delinsT |
| 7 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_017008689.1 | 34.6% | 35% | 184_186delGAGinsCTT;189G>T;192_540delinsT |
| 8 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001317816.2 | 19% | 19.2% | 184_186delGAGinsCTT;189G>T;192_981delinsT |
| 9 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001029998.6 | 18.3% | 18.5% | 184_186delGAGinsCTT;189G>T;192_1020delinsT |
| 10 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_011532311.2 | 18% | 18.2% | 184_186delGAGinsCTT;189G>T;192_1035delinsT |
| 11 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001300842.3 | 17.4% | 17.5% | 184_186delGAGinsCTT;189G>T;192_1074delinsT |
| 12 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XR_001741333.1 | 17.3% | (many diffs) | |
| 13 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NR_133924.2 | 5.2% | (many diffs) | |
| 14 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XR_001741332.2 | 5.1% | (many diffs) | |
| 15 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XR_938780.3 | 5% | (many diffs) | |
| 16 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_017313009.1 | 31.9% | 33.9% | (many diffs) |
| 17 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_006531491.2 | 31% | 32.9% | (many diffs) |
| 18 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_006531489.1 | 23.3% | 24.7% | (many diffs) |
| 19 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_011248545.1 | 22.6% | 24% | (many diffs) |
| 20 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | NM_001282108.1 | 18% | 19.1% | (many diffs) |
| 21 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | NM_001009981.2 | 17.2% | 18.2% | (many diffs) |
| 22 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_006531488.1 | 16.4% | 17.4% | (many diffs) |
| 23 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | NM_029736.2 | 15.7% | 16.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 258
- ORF length:
- 192
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG GCTGCTGGAG AGAATGAGGA AAGACTGGTT CATGGTCGGA ATAGTGCTGG 121 CGATCGCTGG AGCTAAACTG GAGCCGTCCA TAGGGGTGAA TGGGGGACCA CTGAAGCCAG 181 AAATAACTGT ATCCTACATT GCTGTTGCAA CAATATTCTT TAACAGTGGA CTATCATTGA 241 AAACAGAGCT TCTTACTTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 301 gcttatcaat ttgttgcaac gaac