Construct: ORF ccsbBroad304_14686

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008185.1_s304c1, BRDN0000407782
Derived from:
ccsbBroadEn_14686
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KIFC3 (3801)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14686
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3801 KIFC3 kinesin family member C3 NM_001130099.1 99.8% 99.7% 755G>T;1530G>A;1986_1987delACinsCT
2 human 3801 KIFC3 kinesin family member C3 NM_001318714.1 99.8% 99.7% 755G>T;1530G>A;1986_1987delACinsCT
3 human 3801 KIFC3 kinesin family member C3 NM_001318715.2 99.8% 99.7% 755G>T;1530G>A;1986_1987delACinsCT
4 human 3801 KIFC3 kinesin family member C3 XM_024450269.1 99.8% 99.7% 755G>T;1530G>A;1986_1987delACinsCT
5 human 3801 KIFC3 kinesin family member C3 NM_001318713.1 99.3% 99.2% (many diffs)
6 human 3801 KIFC3 kinesin family member C3 XM_011523078.1 98.7% 98.5% (many diffs)
7 human 3801 KIFC3 kinesin family member C3 XM_011523079.1 98.7% 98.5% (many diffs)
8 human 3801 KIFC3 kinesin family member C3 XM_024450265.1 98.7% 98.5% (many diffs)
9 human 3801 KIFC3 kinesin family member C3 XM_024450266.1 98.7% 98.5% (many diffs)
10 human 3801 KIFC3 kinesin family member C3 XM_024450267.1 98.7% 98.5% (many diffs)
11 human 3801 KIFC3 kinesin family member C3 XM_024450268.1 98.7% 98.5% (many diffs)
12 human 3801 KIFC3 kinesin family member C3 NM_001318712.2 94.7% 94.6% (many diffs)
13 human 3801 KIFC3 kinesin family member C3 NM_001318711.2 89.2% 89.1% (many diffs)
14 human 3801 KIFC3 kinesin family member C3 XM_017023227.1 89.2% 89.1% (many diffs)
15 human 3801 KIFC3 kinesin family member C3 XM_005255944.1 88.4% 88.2% (many diffs)
16 human 3801 KIFC3 kinesin family member C3 XM_017023226.1 88.4% 88.2% (many diffs)
17 human 3801 KIFC3 kinesin family member C3 XM_017023225.1 88.3% 88.1% (many diffs)
18 human 3801 KIFC3 kinesin family member C3 NM_001130100.2 83% 82.9% (many diffs)
19 human 3801 KIFC3 kinesin family member C3 NM_005550.4 82.3% 82.1% (many diffs)
20 human 3801 KIFC3 kinesin family member C3 NM_001318710.2 80.8% 80.7% (many diffs)
21 human 3801 KIFC3 kinesin family member C3 XM_017023223.1 80.1% 80% (many diffs)
22 human 3801 KIFC3 kinesin family member C3 XM_011523077.1 79.6% 79.4% (many diffs)
23 human 3801 KIFC3 kinesin family member C3 XM_011523076.1 78.3% 78.2% (many diffs)
24 human 3801 KIFC3 kinesin family member C3 XM_011523075.1 77.7% 77.5% (many diffs)
25 human 3801 KIFC3 kinesin family member C3 XM_017023222.1 75.1% 75% (many diffs)
26 human 3801 KIFC3 kinesin family member C3 XM_017023224.1 75.1% 75% (many diffs)
27 human 3801 KIFC3 kinesin family member C3 XM_017023221.1 69.3% 69.2% (many diffs)
28 human 3801 KIFC3 kinesin family member C3 XM_005255937.1 68.8% 68.6% (many diffs)
29 human 3801 KIFC3 kinesin family member C3 XM_006721188.1 67% 66.9% (many diffs)
30 human 3801 KIFC3 kinesin family member C3 XM_017023220.1 64.8% 64.7% (many diffs)
31 human 3801 KIFC3 kinesin family member C3 XM_017023219.1 63.5% 63.3% (many diffs)
32 human 3801 KIFC3 kinesin family member C3 NR_134678.1 54.5% (many diffs)
33 mouse 16582 Kifc3 kinesin family member C3 NM_001145832.1 88.4% 95.1% (many diffs)
34 mouse 16582 Kifc3 kinesin family member C3 XM_017312586.1 80.6% 86.8% (many diffs)
35 mouse 16582 Kifc3 kinesin family member C3 XM_006530726.3 79.9% 85.9% (many diffs)
36 mouse 16582 Kifc3 kinesin family member C3 XM_006530724.3 76.4% 82.1% (many diffs)
37 mouse 16582 Kifc3 kinesin family member C3 NM_001145831.1 76% 81.8% (many diffs)
38 mouse 16582 Kifc3 kinesin family member C3 NM_010631.2 73.7% 79.3% (many diffs)
39 mouse 16582 Kifc3 kinesin family member C3 XM_017312585.1 73.1% 78.5% (many diffs)
40 mouse 16582 Kifc3 kinesin family member C3 XM_006530723.3 69% 74.2% (many diffs)
41 mouse 16582 Kifc3 kinesin family member C3 XM_006530721.2 64.8% 69.6% (many diffs)
42 mouse 16582 Kifc3 kinesin family member C3 XM_006530722.2 64.8% 69.6% (many diffs)
43 mouse 16582 Kifc3 kinesin family member C3 XM_006530720.3 62% 66.7% (many diffs)
44 mouse 16582 Kifc3 kinesin family member C3 XM_006530718.3 61.6% 66.2% (many diffs)
45 mouse 16582 Kifc3 kinesin family member C3 XM_006530717.3 61.6% 66.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2127
ORF length:
2061
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggt ggagaatgag cgactgaggc aggagatgcg gcgctgtgag gccgagctgc
121aagagctgcg cacaaagcca gcaggtccct gcccaggttg tgagcacagc caggagagcg
181cccagctccg tgacaagctg tcccagctgc agctggagat ggcggaaagc aaaggcatgc
241tgtcagagct gaacctagag gtgcagcaga agaccgaccg gctggctgag gtggagctgc
301gactcaagga ctgcctggct gagaaggcac aggaggagga gcggcttagt cggcgcctgc
361gtgacagcca cgagaccatt gccagcctgc gggcccagtc cccacctgtc aagtatgtca
421tcaagacagt ggaggtggag tcgtccaaga ccaagcaggc cctcagcgag tcccaggccc
481ggaaccagca cctgcaggag caggtggcta tgcagaggca ggtgctgaag gagatggaac
541agcagctgca gagctcacac cagctgaccg cgcggctccg ggcgcagatt gccatgtacg
601agtcagagct ggagcgggcc catgggcaga tgctggagga gatgcagtcc ctggaagagg
661acaagaaccg ggccattgag gaggcctttg ccagagccca ggtggagatg aaggctgtgc
721acgagaatct agcaggcgtc cggaccaact tgctgacctt gcagccggca ctgcggaccc
781tcaccaacga ctacaatggg ctcaagcggc aggtgcgcgt cttcccactg ctgctgcagg
841aggccctcag gagtgtcaag gccgagatag gccaggccat cgaggaggtc aacagcaaca
901accaggagct gctgcgcaag taccgccgcg agctgcagct gcgtaagaag tgccacaatg
961agctcgtgcg gctgaaaggg aacatccgag tgattgctcg tgtccggcca gtcaccaaag
1021aggatgggga aggacctgag gccaccaatg ctgtgacttt cgatgccgac gacgactcca
1081tcatccacct gctgcacaag ggcaagcctg tgtccttcga gctggacaag gtcttctccc
1141cacaggcctc gcagcaggac gtgttccagg aggtgcaggc cctggtcacc tcttgcattg
1201atggcttcaa tgtctgcatc tttgcgtacg gccagacggg cgccggcaag acgtacacga
1261tggaggggac cgctgagaac ccaggtatca accagcgggc cctgcagctg ctcttctccg
1321aggtgcagga gaaggcgtct gactgggagt acaccatcac cgtcagcgct gcggagatct
1381acaatgaggt cctcagggac ctgctaggga aagagcctca ggaaaaactg gagatccggc
1441tgtgcccaga cggcagtggg cagctgtatg taccagggct gactgagttc caagtgcaga
1501gcgtggacga catcaacaag gtgtttgagt ttggccacac taatcgcacg accgagttca
1561ccaacctgaa cgagcacagc tcccgctcgc acgcactgct catcgtgacg gtgcgaggcg
1621tggactgcag cacaggcctc cgcaccacgg ggaagctgaa cctggtggac ttggctggct
1681cggagcgcgt gggcaagtcg ggggccgagg gcagccgcct gcgggaggcg cagcacatca
1741acaagtcgct gtcggctctg ggggacgtca ttgctgccct gcgctcccgc cagggccacg
1801tgcccttccg caactccaag ctcacctacc tgctgcagga ttcgcttagt ggtgacagca
1861agaccctcat ggtggtacag gtgtcccccg tggagaagaa cactagcgag acgctctatt
1921ccctcaagtt tgctgagagg gtgcgctctg tggagctggg gcctgggcta cgcagggcag
1981agcttgggtc ctggtcaagc caggagcatc tagagtggga gccggcttgt cagacgccac
2041agccctcggc ctgggcccac tcagccccca gctctgggac cagtagccgc cctggatcca
2101tccggaggaa gctgcagccc tcggcctgcc caactttctt gtacaaagtg gttggtaagc
2161ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
2221ggcgcgttaa gtcgacaatc aacctctgga tta

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