Construct: ORF ccsbBroad304_16043
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014741.1_s304c1, BRDN0000399059
- Derived from:
- ccsbBroadEn_16043
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TUBA1C (84790)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_16043
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84790 | TUBA1C | tubulin alpha 1c | NM_032704.5 | 99.9% | 100% | 849C>T |
| 2 | human | 10376 | TUBA1B | tubulin alpha 1b | NM_006082.3 | 96.8% | 98% | (many diffs) |
| 3 | human | 7846 | TUBA1A | tubulin alpha 1a | NM_001270399.1 | 96% | 98% | (many diffs) |
| 4 | human | 7846 | TUBA1A | tubulin alpha 1a | NM_006009.4 | 96% | 98% | (many diffs) |
| 5 | human | 84790 | TUBA1C | tubulin alpha 1c | NM_001303115.2 | 92.1% | 92.2% | 0_1ins105;744C>T |
| 6 | human | 84790 | TUBA1C | tubulin alpha 1c | NM_001303116.2 | 92.1% | 92.2% | 0_1ins105;744C>T |
| 7 | human | 84790 | TUBA1C | tubulin alpha 1c | NM_001303117.2 | 92.1% | 92.2% | 0_1ins105;744C>T |
| 8 | human | 7846 | TUBA1A | tubulin alpha 1a | NM_001270400.1 | 88.2% | 90.2% | (many diffs) |
| 9 | human | 84790 | TUBA1C | tubulin alpha 1c | NM_001303114.1 | 86.3% | 86.3% | 1_210del;212A>T;1059C>T |
| 10 | human | 7277 | TUBA4A | tubulin alpha 4a | NM_006000.3 | 85.2% | 95.9% | (many diffs) |
| 11 | human | 7278 | TUBA3C | tubulin alpha 3c | NM_006001.3 | 83.7% | 96.2% | (many diffs) |
| 12 | human | 113457 | TUBA3D | tubulin alpha 3d | NM_080386.4 | 83.2% | 96.2% | (many diffs) |
| 13 | human | 112714 | TUBA3E | tubulin alpha 3e | NM_207312.3 | 82.9% | 94.8% | (many diffs) |
| 14 | human | 7277 | TUBA4A | tubulin alpha 4a | NM_001278552.1 | 82.3% | 92.8% | (many diffs) |
| 15 | human | 51807 | TUBA8 | tubulin alpha 8 | NM_018943.3 | 80.7% | 89.7% | (many diffs) |
| 16 | human | 51807 | TUBA8 | tubulin alpha 8 | NM_001193414.2 | 69.3% | 78.6% | (many diffs) |
| 17 | human | 7277 | TUBA4A | tubulin alpha 4a | XM_017004824.1 | 56.3% | 63.9% | (many diffs) |
| 18 | mouse | 22146 | Tuba1c | tubulin, alpha 1C | NM_009448.4 | 93.7% | 99.3% | (many diffs) |
| 19 | mouse | 22143 | Tuba1b | tubulin, alpha 1B | NM_011654.2 | 92.6% | 98% | (many diffs) |
| 20 | mouse | 22142 | Tuba1a | tubulin, alpha 1A | NM_011653.2 | 91.6% | 98% | (many diffs) |
| 21 | mouse | 22143 | Tuba1b | tubulin, alpha 1B | XM_006520756.1 | 84.3% | 89.2% | (many diffs) |
| 22 | mouse | 22145 | Tuba4a | tubulin, alpha 4A | NM_009447.4 | 84.1% | 95.9% | (many diffs) |
| 23 | mouse | 22147 | Tuba3b | tubulin, alpha 3B | NM_009449.3 | 84% | 96.2% | (many diffs) |
| 24 | mouse | 22144 | Tuba3a | tubulin, alpha 3A | NM_009446.3 | 83% | 96.2% | (many diffs) |
| 25 | mouse | 22145 | Tuba4a | tubulin, alpha 4A | XM_006496478.1 | 81.3% | 92.8% | (many diffs) |
| 26 | mouse | 53857 | Tuba8 | tubulin, alpha 8 | NM_017379.2 | 78.7% | 89.9% | (many diffs) |
| 27 | mouse | 22145 | Tuba4a | tubulin, alpha 4A | NM_001313724.1 | 55.8% | 63.9% | (many diffs) |
| 28 | mouse | 22145 | Tuba4a | tubulin, alpha 4A | NM_001313723.1 | 46.3% | 53% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1413
- ORF length:
- 1347
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgcg tgagtgcatc tccatccacg ttggccaggc tggtgtccag attggcaatg 121 cctgctggga gctctactgc ctggaacacg gcatccagcc cgatggccag atgccaagtg 181 acaagaccat tgggggagga gatgattcct tcaacacctt cttcagtgaa acgggtgctg 241 gcaagcatgt gccccgggca gtgtttgtag acttggaacc cacagtcatt gatgaagttc 301 gcactggcac ttaccgccag ctcttccacc ctgagcaact catcacaggc aaggaagatg 361 ctgccaataa ctatgcccga gggcactaca ccattggcaa ggagatcatt gacctcgtgt 421 tggaccgaat tcgcaagctg gctgaccagt gcaccggtct tcagggcttc ttggttttcc 481 acagctttgg tgggggaact ggttctgggt tcacctcgct gctcatggaa cgtctctcag 541 ttgattatgg caagaagtcc aagctggagt tctccattta cccggcgccc caggtttcca 601 cagctgtagt tgagccctac aactccatcc tcaccaccca caccaccctg gagcactctg 661 attgtgcctt catggtagac aatgaggcca tctatgacat ctgtcgtaga aacctcgata 721 tcgagcgccc aacctacact aaccttaacc gccttattag ccagattgtg tcctccatca 781 ctgcttccct gagatttgat ggagccctga atgttgacct gacagaattc cagaccaacc 841 tggtgcccta cccccgcatc cacttccctc tggccacata tgcccctgtc atctctgctg 901 agaaagccta ccatgaacag cttactgtag cagagatcac caatgcttgc tttgagccag 961 ccaaccagat ggtgaaatgt gaccctcgcc atggtaaata catggcttgc tgcctgttat 1021 accgtggtga cgtggttccc aaagatgtca atgctgccat tgccaccatc aaaaccaagc 1081 gtaccatcca gtttgtggat tggtgcccca ctggcttcaa ggttggcatt aattaccagc 1141 ctcccactgt ggtgcctggc ggagacctgg ccaaggtaca gagagctgtg tgcatgctga 1201 gcaataccac agctgttgcc gaggcctggg ctcgcctgga ccacaagttt gacctgatgt 1261 atgccaagcg tgcctttgtt cactggtacg tgggtgaggg gatggaggaa ggcgagtttt 1321 cagaggcccg tgaggacatg gctgcccttg agaaggatta tgaggaggtt ggagcagata 1381 gtgctgacgg agaggatgag ggtgaagagt attnnccaac tttcttgtac aaagtggttg 1441 gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta 1501 accggtggcg cgttaagtcg acaatcaacc tctggatta