Construct: ORF ccsbBroadEn_00472

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005912.1_s300c1, BRDN0000393830
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EBF1 (1879)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1879 EBF1 EBF transcription factor 1 NM_024007.5 100% 100%
2 human 1879 EBF1 EBF transcription factor 1 NM_001290360.3 99.8% 99.8% 778_780delGCA
3 human 1879 EBF1 EBF transcription factor 1 NM_001324107.2 98.8% 98.6% 754_755insGTACGCCCTCTTATCTGGAA;756_757insT
4 human 1879 EBF1 EBF transcription factor 1 NM_001324108.2 98.6% 98.6% 753_754ins24
5 human 1879 EBF1 EBF transcription factor 1 NM_001324103.2 97% 96.1% (many diffs)
6 human 1879 EBF1 EBF transcription factor 1 XM_017009193.1 97% 96.1% (many diffs)
7 human 1879 EBF1 EBF transcription factor 1 NM_001324101.2 96.8% 96% (many diffs)
8 human 1879 EBF1 EBF transcription factor 1 XM_017009192.1 96.8% 96% (many diffs)
9 human 1879 EBF1 EBF transcription factor 1 XM_017009194.1 95.8% 94.8% (many diffs)
10 human 1879 EBF1 EBF transcription factor 1 NM_001324106.2 95.7% 94.8% (many diffs)
11 human 1879 EBF1 EBF transcription factor 1 XM_017009195.1 95.7% 94.8% (many diffs)
12 human 1879 EBF1 EBF transcription factor 1 NM_182708.3 94.7% 94.7% 482_483ins69;684_685ins24
13 human 1879 EBF1 EBF transcription factor 1 NM_001364156.1 93.4% 92.5% 4delT;10_11ins38;17_18ins77
14 human 1879 EBF1 EBF transcription factor 1 XM_017009197.1 90.6% 88.9% (many diffs)
15 human 1879 EBF1 EBF transcription factor 1 NM_001364157.1 90.4% 88.7% (many diffs)
16 human 1879 EBF1 EBF transcription factor 1 XM_017009196.1 90.4% 88.7% (many diffs)
17 human 1879 EBF1 EBF transcription factor 1 NM_001364155.1 89.8% 89.6% 1369_1370ins180
18 human 1879 EBF1 EBF transcription factor 1 NM_001324109.2 86.9% 85.9% (many diffs)
19 human 1879 EBF1 EBF transcription factor 1 NM_001364159.1 77.4% 77.4% 0_1ins399
20 human 1879 EBF1 EBF transcription factor 1 NM_001324111.2 77.3% 77.3% 0_1ins399;379_381delGCA
21 human 1879 EBF1 EBF transcription factor 1 XM_024454393.1 77.3% 77.3% 0_1ins399;379_381delGCA
22 human 1879 EBF1 EBF transcription factor 1 NM_001364158.1 76.1% 76.1% 0_1ins399;354_355ins24
23 human 1879 EBF1 EBF transcription factor 1 XM_024454390.1 74.9% 74% (many diffs)
24 human 1879 EBF1 EBF transcription factor 1 XM_024454391.1 74.9% 74% (many diffs)
25 human 1879 EBF1 EBF transcription factor 1 XM_024454392.1 73.7% 72.8% (many diffs)
26 human 1879 EBF1 EBF transcription factor 1 XM_017009201.2 64.9% 64.9% 0_1ins621
27 human 1879 EBF1 EBF transcription factor 1 XM_017009199.1 62.7% 61.8% (many diffs)
28 human 1879 EBF1 EBF transcription factor 1 XM_017009200.2 62.7% 61.8% (many diffs)
29 human 1879 EBF1 EBF transcription factor 1 XM_017009203.1 60.1% 59.2% (many diffs)
30 human 1879 EBF1 EBF transcription factor 1 XM_017009202.1 60% 59.1% (many diffs)
31 human 1879 EBF1 EBF transcription factor 1 XM_017009204.1 52.3% 47.1% (many diffs)
32 mouse 13591 Ebf1 early B cell factor 1 NM_007897.3 94% 100% (many diffs)
33 mouse 13591 Ebf1 early B cell factor 1 NM_001290709.1 93.9% 99.8% (many diffs)
34 mouse 13591 Ebf1 early B cell factor 1 XM_006532155.3 92.8% 98.6% (many diffs)
35 mouse 13591 Ebf1 early B cell factor 1 XM_006532156.3 92.7% 98.6% (many diffs)
36 mouse 13591 Ebf1 early B cell factor 1 XM_006532157.3 87.4% 92.9% (many diffs)
37 mouse 13591 Ebf1 early B cell factor 1 NM_001290710.1 83.4% 88.3% (many diffs)
38 mouse 13591 Ebf1 early B cell factor 1 NM_001290711.1 72.5% 77.4% (many diffs)
39 mouse 13591 Ebf1 early B cell factor 1 XM_006532158.3 72.4% 77.3% (many diffs)
40 mouse 13591 Ebf1 early B cell factor 1 XM_017314250.1 72.4% 77.3% (many diffs)
41 mouse 13591 Ebf1 early B cell factor 1 XM_017314251.1 71.2% 76.1% (many diffs)
42 mouse 13591 Ebf1 early B cell factor 1 XM_017314252.1 71.2% 76.1% (many diffs)
43 mouse 13593 Ebf3 early B cell factor 3 XM_011241672.1 70.9% 80.9% (many diffs)
44 mouse 13593 Ebf3 early B cell factor 3 XM_006507334.1 68.2% 76.3% (many diffs)
45 mouse 13593 Ebf3 early B cell factor 3 XM_006507337.3 63.7% 72.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1839
ORF length:
1773
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT TGGGATTCAG GAAAGCATCC AACGGAGTGG AAGCAGCATG AAGGAAGAGC
121CGCTGGGCAG CGGCATGAAC GCGGTGCGGA CGTGGATGCA GGGCGCCGGG GTGCTGGACG
181CCAACACGGC GGCGCAGAGC GGGGTGGGTC TGGCCCGGGC TCACTTTGAG AAGCAGCCGC
241CTTCCAATCT GCGGAAATCC AACTTCTTCC ACTTCGTCCT GGCCCTCTAC GACAGACAGG
301GCCAGCCCGT GGAGATCGAG AGGACAGCGT TTGTGGGGTT CGTGGAGAAG GAAAAAGAAG
361CCAACAGCGA AAAGACCAAT AACGGAATTC ACTACCGGCT TCAGCTTCTC TACAGCAATG
421GGATAAGGAC GGAGCAGGAT TTCTACGTGC GCCTCATTGA CTCCATGACA AAACAAGCCA
481TAGTGTATGA AGGCCAAGAC AAGAACCCAG AAATGTGCCG AGTCTTGCTC ACACATGAGA
541TCATGTGCAG CCGCTGTTGT GACAAGAAAA GCTGTGGCAA CCGAAATGAG ACTCCCTCAG
601ATCCAGTGAT AATTGACAGG TTCTTCTTGA AATTTTTCCT CAAATGTAAC CAAAATTGCC
661TAAAGAATGC GGGAAACCCA CGTGACATGC GGAGATTCCA GGTCGTGGTG TCTACGACAG
721TCAATGTGGA TGGCCATGTC CTGGCAGTCT CTGATAACAT GTTTGTCCAT AATAATTCCA
781AGCATGGGCG GAGGGCTCGG AGGCTTGACC CCTCGGAAGG TACGCCCTCT TATCTGGAAC
841ATGCTACTCC CTGTATCAAA GCCATCAGCC CGAGTGAAGG ATGGACGACG GGAGGTGCGA
901CTGTGATCAT CATAGGGGAC AATTTCTTTG ATGGGTTACA GGTCATATTC GGTACCATGC
961TGGTCTGGAG TGAGTTGATC ACTCCTCATG CCATCCGTGT GCAGACCCCT CCTCGGCACA
1021TCCCTGGTGT TGTGGAAGTC ACACTGTCCT ACAAATCTAA GCAGTTCTGC AAAGGAACAC
1081CAGGCAGATT CATTTATACA GCGCTCAACG AACCCACCAT CGATTATGGT TTCCAGAGGT
1141TACAGAAGGT CATTCCTCGG CACCCTGGTG ACCCTGAGCG TTTGCCAAAG GAAGTAATAC
1201TCAAAAGGGC TGCGGATCTG GTAGAAGCAC TGTATGGGAT GCCACACAAC AACCAGGAAA
1261TCATTCTGAA GAGAGCGGCC GACATTGCCG AGGCCCTGTA CAGTGTTCCC CGCAACCACA
1321ACCAACTCCC GGCCCTTGCT AACACCTCGG TCCACGCAGG GATGATGGGC GTGAATTCGT
1381TCAGTGGACA ACTGGCCGTG AATGTCTCCG AGGCATCACA AGCCACCAAT CAGGGTTTCA
1441CCCGCAACTC AAGCAGCGTA TCACCACACG GGTACGTGCC GAGCACCACT CCCCAGCAGA
1501CCAACTATAA CTCCGTCACC ACGAGCATGA ACGGATACGG CTCTGCCGCA ATGTCCAATT
1561TGGGCGGCTC CCCCACCTTC CTCAACGGCT CAGCTGCCAA CTCCCCCTAT GCCATAGTGC
1621CATCCAGCCC CACCATGGCC TCCTCCACAA GCCTCCCCTC CAACTGCAGC AGCTCCTCGG
1681GCATCTTCTC CTTCTCACCA GCCAACATGG TCTCAGCCGT GAAACAGAAG AGTGCTTTCG
1741CACCAGTCGT CAGACCCCAG ACCTCCCCAC CTCCCACCTG CACCAGCACC AACGGGAACA
1801GCCTGCAAGC GATATCTGGC ATGATTGTTC CTCCTATGTG CCCAACTTTC TTGTACAAAG
1861Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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