Construct: ORF ccsbBroadEn_00624

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005510.1_s300c1, BRDN0000389283
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GCK (2645)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2645 GCK glucokinase NM_000162.5 100% 100%
2 human 2645 GCK glucokinase NM_001354800.1 98% 98% 1368_1369ins27
3 human 2645 GCK glucokinase NM_033508.3 97.8% 97.2% (many diffs)
4 human 2645 GCK glucokinase NM_033507.3 97.7% 97.4% (many diffs)
5 human 2645 GCK glucokinase NM_001354803.1 29.1% 27.3% (many diffs)
6 human 2645 GCK glucokinase NM_001354801.1 27.3% 27% 1_1delAins1003;6_6delCinsGCAGGTGGAG
7 human 2645 GCK glucokinase XM_024446707.1 18.2% 18.2% 0_1ins1140
8 human 2645 GCK glucokinase NM_001354802.1 16.3% 16.3% 0_1ins1140;228_229ins27
9 mouse 103988 Gck glucokinase NM_010292.5 89% 95.9% (many diffs)
10 mouse 103988 Gck glucokinase NM_001287386.1 87.3% 93.7% (many diffs)
11 mouse 103988 Gck glucokinase XM_006514444.1 76.2% 84.1% (many diffs)
12 mouse 103988 Gck glucokinase XM_006514443.3 74.8% 82.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1461
ORF length:
1395
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT GGACGACAGA GCCAGGATGG AGGCCGCCAA GAAGGAGAAG GTAGAGCAGA
121TCCTGGCAGA GTTCCAGCTG CAGGAGGAGG ACCTGAAGAA GGTGATGAGA CGGATGCAGA
181AGGAGATGGA CCGCGGCCTG AGGCTGGAGA CCCATGAAGA GGCCAGTGTG AAGATGCTGC
241CCACCTACGT GCGCTCCACC CCAGAAGGCT CAGAAGTCGG GGACTTCCTC TCCCTGGACC
301TGGGTGGCAC TAACTTCAGG GTGATGCTGG TGAAGGTGGG AGAAGGTGAG GAGGGGCAGT
361GGAGCGTGAA GACCAAACAC CAGATGTACT CCATCCCCGA GGACGCCATG ACCGGCACTG
421CTGAGATGCT CTTCGACTAC ATCTCTGAGT GCATCTCCGA CTTCCTGGAC AAGCATCAGA
481TGAAACACAA GAAGCTGCCC CTGGGCTTCA CCTTCTCCTT TCCTGTGAGG CACGAAGACA
541TCGATAAGGG CATCCTTCTC AACTGGACCA AGGGCTTCAA GGCCTCAGGA GCAGAAGGGA
601ACAATGTCGT GGGGCTTCTG CGAGACGCTA TCAAACGGAG AGGGGACTTT GAAATGGATG
661TGGTGGCAAT GGTGAATGAC ACGGTGGCCA CGATGATCTC CTGCTACTAC GAAGACCATC
721AGTGCGAGGT CGGCATGATC GTGGGCACGG GCTGCAATGC CTGCTACATG GAGGAGATGC
781AGAATGTGGA GCTGGTGGAG GGGGACGAGG GCCGCATGTG CGTCAATACC GAGTGGGGCG
841CCTTCGGGGA CTCCGGCGAG CTGGACGAGT TCCTGCTGGA GTATGACCGC CTGGTGGACG
901AGAGCTCTGC AAACCCCGGT CAGCAGCTGT ATGAGAAGCT CATAGGTGGC AAGTACATGG
961GCGAGCTGGT GCGGCTTGTG CTGCTCAGGC TCGTGGACGA AAACCTGCTC TTCCACGGGG
1021AGGCCTCCGA GCAGCTGCGC ACACGCGGAG CCTTCGAGAC GCGCTTCGTG TCGCAGGTGG
1081AGAGCGACAC GGGCGACCGC AAGCAGATCT ACAACATCCT GAGCACGCTG GGGCTGCGAC
1141CCTCGACCAC CGACTGCGAC ATCGTGCGCC GCGCCTGCGA GAGCGTGTCT ACGCGCGCTG
1201CGCACATGTG CTCGGCGGGG CTGGCGGGCG TCATCAACCG CATGCGCGAG AGCCGCAGCG
1261AGGACGTAAT GCGCATCACT GTGGGCGTGG ATGGCTCCGT GTACAAGCTG CACCCCAGCT
1321TCAAGGAGCG GTTCCATGCC AGCGTGCGCA GGCTGACGCC CAGCTGCGAG ATCACCTTCA
1381TCGAGTCGGA GGAGGGCAGT GGCCGGGGCG CGGCCCTGGT CTCGGCGGTG GCCTGTAAGA
1441AGGCCTGTAT GCTGGGCCAG TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1501attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)