Construct: ORF ccsbBroadEn_00760

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006637.1_s300c1, BRDN0000386788
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NR4A1 (3164)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3164 NR4A1 nuclear receptor subfamily ... NM_002135.4 100% 100%
2 human 3164 NR4A1 nuclear receptor subfamily ... NM_173157.3 100% 100%
3 human 3164 NR4A1 nuclear receptor subfamily ... XM_005268824.3 100% 100%
4 human 3164 NR4A1 nuclear receptor subfamily ... XM_006719363.1 100% 100%
5 human 3164 NR4A1 nuclear receptor subfamily ... XM_006719364.4 100% 100%
6 human 3164 NR4A1 nuclear receptor subfamily ... XM_017019247.1 99.3% 99.3% 1_12del
7 human 3164 NR4A1 nuclear receptor subfamily ... NM_001202233.1 97.8% 97.8% 1_39del
8 human 3164 NR4A1 nuclear receptor subfamily ... NM_001202234.1 91.7% 91.7% 1_162del
9 human 3164 NR4A1 nuclear receptor subfamily ... XM_005268822.3 89.2% 89.2% 1_216del
10 mouse 15370 Nr4a1 nuclear receptor subfamily ... NM_010444.2 85.8% 91.3% (many diffs)
11 mouse 15370 Nr4a1 nuclear receptor subfamily ... XM_006520456.1 85.8% 91.3% (many diffs)
12 mouse 15370 Nr4a1 nuclear receptor subfamily ... XM_006520458.1 85.8% 91.3% (many diffs)
13 mouse 15370 Nr4a1 nuclear receptor subfamily ... XM_006520459.3 85.8% 91.3% (many diffs)
14 mouse 15370 Nr4a1 nuclear receptor subfamily ... XM_017316436.1 85.8% 91.3% (many diffs)
15 mouse 15370 Nr4a1 nuclear receptor subfamily ... XM_006520455.1 81% 86.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1860
ORF length:
1794
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC CTGTATCCAA GCCCAATATG GGACACCAGC ACCGAGTCCG GGACCCCGTG
121ACCACCTGGC AAGCGACCCC CTGACCCCTG AGTTCATCAA GCCCACCATG GACCTGGCCA
181GCCCCGAGGC AGCCCCCGCT GCCCCCACTG CCCTGCCCAG CTTCAGCACC TTCATGGACG
241GCTACACAGG AGAGTTTGAC ACCTTCCTCT ACCAGCTGCC AGGAACAGTC CAGCCATGCT
301CCTCAGCCTC CTCCTCGGCC TCCTCCACAT CCTCGTCCTC AGCCACCTCC CCTGCCTCTG
361CCTCCTTCAA GTTCGAGGAC TTCCAGGTGT ACGGCTGCTA CCCCGGCCCC CTGAGCGGCC
421CAGTGGATGA GGCCCTGTCC TCCAGTGGCT CTGACTACTA TGGCAGCCCC TGCTCGGCCC
481CGTCGCCCTC CACGCCCAGC TTCCAGCCGC CCCAGCTCTC TCCCTGGGAT GGCTCCTTCG
541GCCACTTCTC GCCCAGCCAG ACTTACGAAG GCCTGCGGGC ATGGACAGAG CAGCTGCCCA
601AAGCCTCTGG GCCCCCACAG CCTCCAGCCT TCTTTTCCTT CAGTCCTCCC ACCGGCCCCA
661GCCCCAGCCT GGCCCAGAGC CCCCTGAAGT TGTTCCCCTC ACAGGCCACC CACCAGCTGG
721GGGAGGGAGA GAGCTATTCC ATGCCTACGG CCTTCCCAGG TTTGGCACCC ACTTCTCCAC
781ACCTTGAGGG CTCGGGGATA CTGGATACAC CCGTGACCTC AACCAAGGCC CGGAGCGGGG
841CCCCAGGTGG AAGTGAAGGC CGCTGTGCTG TGTGTGGGGA CAACGCTTCA TGCCAGCATT
901ATGGTGTCCG CACATGTGAG GGCTGCAAGG GCTTCTTCAA GCGCACAGTG CAGAAAAACG
961CCAAGTACAT CTGCCTGGCT AACAAGGACT GCCCTGTGGA CAAGAGGCGG CGAAACCGCT
1021GCCAGTTCTG CCGCTTCCAG AAGTGCCTGG CGGTGGGCAT GGTGAAGGAA GTTGTCCGAA
1081CAGACAGCCT GAAGGGGCGG CGGGGCCGGC TACCTTCAAA ACCCAAGCAG CCCCCAGATG
1141CCTCCCCTGC CAATCTCCTC ACTTCCCTGG TCCGTGCACA CCTGGACTCA GGGCCCAGCA
1201CTGCCAAACT GGACTACTCC AAGTTCCAGG AGCTGGTGCT GCCCCACTTT GGGAAGGAAG
1261ATGCTGGGGA TGTACAGCAG TTCTACGACC TGCTCTCCGG TTCTCTGGAG GTCATCCGCA
1321AGTGGGCGGA GAAGATCCCT GGCTTTGCTG AGCTGTCACC GGCTGACCAG GACCTGTTGC
1381TGGAGTCGGC CTTCCTGGAG CTCTTCATCC TCCGCCTGGC GTACAGGTCT AAGCCAGGCG
1441AGGGCAAGCT CATCTTCTGC TCAGGCCTGG TGCTACACCG GCTGCAGTGT GCCCGTGGCT
1501TCGGGGACTG GATTGACAGT ATCCTGGCCT TCTCAAGGTC CCTGCACAGC TTGCTTGTCG
1561ATGTCCCTGC CTTCGCCTGC CTCTCTGCCC TTGTCCTCAT CACCGACCGG CATGGGCTGC
1621AGGAGCCGCG GCGGGTGGAG GAGCTGCAGA ACCGCATCGC CAGCTGCCTG AAGGAGCACG
1681TGGCAGCTGT GGCGGGCGAG CCCCAGCCAG CCAGCTGCCT GTCACGTCTG TTGGGCAAAC
1741TGCCCGAGCT GCGGACCCTG TGCACCCAGG GCCTGCAGCG CATCTTCTAC CTCAAGCTGG
1801AGGACTTGGT GCCCCCTCCA CCCATCATTG ACAAGATCTT CATGGACACG CTGCCCTTCT
1861GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1921acgaac

Download FASTA (ORF) (Full)