Construct: ORF ccsbBroadEn_00760
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006637.1_s300c1, BRDN0000386788
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NR4A1 (3164)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3164 | NR4A1 | nuclear receptor subfamily ... | NM_002135.4 | 100% | 100% | |
| 2 | human | 3164 | NR4A1 | nuclear receptor subfamily ... | NM_173157.3 | 100% | 100% | |
| 3 | human | 3164 | NR4A1 | nuclear receptor subfamily ... | XM_005268824.3 | 100% | 100% | |
| 4 | human | 3164 | NR4A1 | nuclear receptor subfamily ... | XM_006719363.1 | 100% | 100% | |
| 5 | human | 3164 | NR4A1 | nuclear receptor subfamily ... | XM_006719364.4 | 100% | 100% | |
| 6 | human | 3164 | NR4A1 | nuclear receptor subfamily ... | XM_017019247.1 | 99.3% | 99.3% | 1_12del |
| 7 | human | 3164 | NR4A1 | nuclear receptor subfamily ... | NM_001202233.1 | 97.8% | 97.8% | 1_39del |
| 8 | human | 3164 | NR4A1 | nuclear receptor subfamily ... | NM_001202234.1 | 91.7% | 91.7% | 1_162del |
| 9 | human | 3164 | NR4A1 | nuclear receptor subfamily ... | XM_005268822.3 | 89.2% | 89.2% | 1_216del |
| 10 | mouse | 15370 | Nr4a1 | nuclear receptor subfamily ... | NM_010444.2 | 85.8% | 91.3% | (many diffs) |
| 11 | mouse | 15370 | Nr4a1 | nuclear receptor subfamily ... | XM_006520456.1 | 85.8% | 91.3% | (many diffs) |
| 12 | mouse | 15370 | Nr4a1 | nuclear receptor subfamily ... | XM_006520458.1 | 85.8% | 91.3% | (many diffs) |
| 13 | mouse | 15370 | Nr4a1 | nuclear receptor subfamily ... | XM_006520459.3 | 85.8% | 91.3% | (many diffs) |
| 14 | mouse | 15370 | Nr4a1 | nuclear receptor subfamily ... | XM_017316436.1 | 85.8% | 91.3% | (many diffs) |
| 15 | mouse | 15370 | Nr4a1 | nuclear receptor subfamily ... | XM_006520455.1 | 81% | 86.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1860
- ORF length:
- 1794
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CTGTATCCAA GCCCAATATG GGACACCAGC ACCGAGTCCG GGACCCCGTG 121 ACCACCTGGC AAGCGACCCC CTGACCCCTG AGTTCATCAA GCCCACCATG GACCTGGCCA 181 GCCCCGAGGC AGCCCCCGCT GCCCCCACTG CCCTGCCCAG CTTCAGCACC TTCATGGACG 241 GCTACACAGG AGAGTTTGAC ACCTTCCTCT ACCAGCTGCC AGGAACAGTC CAGCCATGCT 301 CCTCAGCCTC CTCCTCGGCC TCCTCCACAT CCTCGTCCTC AGCCACCTCC CCTGCCTCTG 361 CCTCCTTCAA GTTCGAGGAC TTCCAGGTGT ACGGCTGCTA CCCCGGCCCC CTGAGCGGCC 421 CAGTGGATGA GGCCCTGTCC TCCAGTGGCT CTGACTACTA TGGCAGCCCC TGCTCGGCCC 481 CGTCGCCCTC CACGCCCAGC TTCCAGCCGC CCCAGCTCTC TCCCTGGGAT GGCTCCTTCG 541 GCCACTTCTC GCCCAGCCAG ACTTACGAAG GCCTGCGGGC ATGGACAGAG CAGCTGCCCA 601 AAGCCTCTGG GCCCCCACAG CCTCCAGCCT TCTTTTCCTT CAGTCCTCCC ACCGGCCCCA 661 GCCCCAGCCT GGCCCAGAGC CCCCTGAAGT TGTTCCCCTC ACAGGCCACC CACCAGCTGG 721 GGGAGGGAGA GAGCTATTCC ATGCCTACGG CCTTCCCAGG TTTGGCACCC ACTTCTCCAC 781 ACCTTGAGGG CTCGGGGATA CTGGATACAC CCGTGACCTC AACCAAGGCC CGGAGCGGGG 841 CCCCAGGTGG AAGTGAAGGC CGCTGTGCTG TGTGTGGGGA CAACGCTTCA TGCCAGCATT 901 ATGGTGTCCG CACATGTGAG GGCTGCAAGG GCTTCTTCAA GCGCACAGTG CAGAAAAACG 961 CCAAGTACAT CTGCCTGGCT AACAAGGACT GCCCTGTGGA CAAGAGGCGG CGAAACCGCT 1021 GCCAGTTCTG CCGCTTCCAG AAGTGCCTGG CGGTGGGCAT GGTGAAGGAA GTTGTCCGAA 1081 CAGACAGCCT GAAGGGGCGG CGGGGCCGGC TACCTTCAAA ACCCAAGCAG CCCCCAGATG 1141 CCTCCCCTGC CAATCTCCTC ACTTCCCTGG TCCGTGCACA CCTGGACTCA GGGCCCAGCA 1201 CTGCCAAACT GGACTACTCC AAGTTCCAGG AGCTGGTGCT GCCCCACTTT GGGAAGGAAG 1261 ATGCTGGGGA TGTACAGCAG TTCTACGACC TGCTCTCCGG TTCTCTGGAG GTCATCCGCA 1321 AGTGGGCGGA GAAGATCCCT GGCTTTGCTG AGCTGTCACC GGCTGACCAG GACCTGTTGC 1381 TGGAGTCGGC CTTCCTGGAG CTCTTCATCC TCCGCCTGGC GTACAGGTCT AAGCCAGGCG 1441 AGGGCAAGCT CATCTTCTGC TCAGGCCTGG TGCTACACCG GCTGCAGTGT GCCCGTGGCT 1501 TCGGGGACTG GATTGACAGT ATCCTGGCCT TCTCAAGGTC CCTGCACAGC TTGCTTGTCG 1561 ATGTCCCTGC CTTCGCCTGC CTCTCTGCCC TTGTCCTCAT CACCGACCGG CATGGGCTGC 1621 AGGAGCCGCG GCGGGTGGAG GAGCTGCAGA ACCGCATCGC CAGCTGCCTG AAGGAGCACG 1681 TGGCAGCTGT GGCGGGCGAG CCCCAGCCAG CCAGCTGCCT GTCACGTCTG TTGGGCAAAC 1741 TGCCCGAGCT GCGGACCCTG TGCACCCAGG GCCTGCAGCG CATCTTCTAC CTCAAGCTGG 1801 AGGACTTGGT GCCCCCTCCA CCCATCATTG ACAAGATCTT CATGGACACG CTGCCCTTCT 1861 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1921 acgaac