Construct: ORF ccsbBroadEn_01752
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006152.1_s300c1, BRDN0000398336
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UGT2B10 (7365)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7365 | UGT2B10 | UDP glucuronosyltransferase... | NM_001075.6 | 100% | 100% | |
| 2 | human | 7365 | UGT2B10 | UDP glucuronosyltransferase... | XM_017008585.2 | 99.4% | 99.4% | 865_866insAGGAAATGG |
| 3 | human | 10720 | UGT2B11 | UDP glucuronosyltransferase... | NM_001073.3 | 94.9% | 90.5% | (many diffs) |
| 4 | human | 54490 | UGT2B28 | UDP glucuronosyltransferase... | NM_053039.2 | 94.1% | 89% | (many diffs) |
| 5 | human | 7364 | UGT2B7 | UDP glucuronosyltransferase... | NM_001074.4 | 92.6% | 87.5% | (many diffs) |
| 6 | human | 7363 | UGT2B4 | UDP glucuronosyltransferase... | NM_021139.3 | 90.1% | 85.4% | (many diffs) |
| 7 | human | 7367 | UGT2B17 | UDP glucuronosyltransferase... | NM_001077.3 | 85.6% | 76.7% | (many diffs) |
| 8 | human | 7367 | UGT2B17 | UDP glucuronosyltransferase... | XM_024454205.1 | 85.6% | 76.7% | (many diffs) |
| 9 | human | 7366 | UGT2B15 | UDP glucuronosyltransferase... | NM_001076.4 | 84.9% | 77.3% | (many diffs) |
| 10 | human | 7365 | UGT2B10 | UDP glucuronosyltransferase... | NM_001144767.3 | 84% | 84% | 465_466ins252 |
| 11 | human | 10720 | UGT2B11 | UDP glucuronosyltransferase... | XM_011531550.2 | 80.2% | 77.5% | (many diffs) |
| 12 | human | 54490 | UGT2B28 | UDP glucuronosyltransferase... | XM_017008303.1 | 69.5% | 65.2% | (many diffs) |
| 13 | human | 7363 | UGT2B4 | UDP glucuronosyltransferase... | NM_001297616.1 | 67.2% | 62.8% | (many diffs) |
| 14 | human | 7364 | UGT2B7 | UDP glucuronosyltransferase... | NM_001330719.1 | 63.6% | 58% | (many diffs) |
| 15 | human | 7363 | UGT2B4 | UDP glucuronosyltransferase... | NM_001297615.2 | 62% | 56.8% | (many diffs) |
| 16 | human | 54490 | UGT2B28 | UDP glucuronosyltransferase... | NM_001207004.2 | 59.1% | 54.8% | (many diffs) |
| 17 | human | 7365 | UGT2B10 | UDP glucuronosyltransferase... | NM_001290091.2 | 53% | 53% | 0_1ins744 |
| 18 | human | 10720 | UGT2B11 | UDP glucuronosyltransferase... | XM_017007660.2 | 51.1% | 50.5% | (many diffs) |
| 19 | human | 7364 | UGT2B7 | UDP glucuronosyltransferase... | NM_001349568.1 | 50.3% | 49.2% | (many diffs) |
| 20 | human | 101929773 | LOC101929773 | UDP-glucuronosyltransferase... | XM_005275640.3 | 35.8% | 35.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1653
- ORF length:
- 1584
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTCTGAAA TGGACTACAG TTCTGCTGAT ACAACTCAGT TTTTACTTTA 121 GCTCTGGGAG TTGTGGAAAG GTGCTGGTAT GGGCCGCAGA ATACAGCCTT TGGATGAATA 181 TGAAGACAAT CCTGAAAGAA CTTGTTCAGA GAGGTCATGA GGTGACTGTA CTGGCATCTT 241 CAGCTTCCAT TCTTTTTGAT CCCAACGACT CATCCACTCT TAAACTTGAA GTTTATCCTA 301 CATCTTTAAC TAAAACTGAA TTTGAGAATA TCATCATGCA ATTGGTTAAG AGATTGTCAG 361 AAATTCAAAA AGATACATTT TGGTTACCTT TTTCACAAGA ACAAGAAATC CTGTGGGCAA 421 TTAATGACAT AATTAGAAAC TTCTGTAAAG ATGTAGTTTC AAATAAGAAA CTTATGAAAA 481 AACTACAAGA GTCAAGATTT GACATCGTTT TTGCAGATGC TTATTTACCC TGTGGTGAGC 541 TGCTGGCTGA GCTATTTAAC ATACCCTTTG TGTACAGTCA CAGCTTCAGT CCTGGCTACT 601 CATTTGAAAG GCACAGTGGA GGATTTATTT TCCCTCCTTC CTACGTACCT GTTGTTATGT 661 CAAAATTAAG TGATCAAATG ACTTTCATGG AGAGGGTAAA AAATATGCTC TATGTGCTTT 721 ATTTTGACTT TTGGTTCCAA ATATTTAATA TGAAGAAGTG GGATCAGTTT TACAGTGAAG 781 TTTTAGGAAG ACCCACTACA TTATCTGAGA CAATGAGGAA AGCTGACATA TGGCTTATGC 841 GAAACTCCTG GAATTTTAAA TTTCCTCATC CATTCTTACC AAATGTTGAT TTTGTTGGAG 901 GACTCCACTG CAAACCTGCC AAACCCCTAC CTAAGGAAAT GGAGGAGTTT GTACAGAGCT 961 CTGGAGAAAA TGGTGTTGTG GTGTTTTCTC TGGGGTCAAT GGTCAGTAAC ATGACAGAAG 1021 AAAGGGCCAA CGTAATTGCA ACAGCCCTTG CCAAGATCCC ACAAAAGGTT CTTTGGAGAT 1081 TTGATGGGAA TAAACCAGAT GCCTTAGGTC TCAATACTCG ACTGTACAAG TGGATACCCC 1141 AGAATGACCT TCTAGGTCAT CCAAAAACCA GAGCTTTTAT AACTCATGGT GGAGCCAATG 1201 GCATCTATGA GGCAATCTAC CATGGGATCC CTATGGTGGG CATTCCATTG TTTTTTGATC 1261 AACCTGATAA TATTGCTCAC ATGAAGGCCA AGGGAGCAGC TGTTAGAGTG GACTTCAACA 1321 CAATGTCGAG TACAGACCTG CTGAATGCAC TGAAGACAGT AATTAATGAT CCTTCATATA 1381 AAGAGAATAT TATGAAATTA TCAAGAATTC AACATGATCA ACCAGTGAAG CCCCTGGATC 1441 GAGCAGTCTT CTGGATTGAA TTTGTCATGC GCCACAAAGG AGCCAAACAT CTTCGAGTTG 1501 CAGCCCACAA CCTCACCTGG TTCCAGTACC ACTCTTTGGA TGTGATTGGG TTCCTGCTGG 1561 CTTGTGTGGC AACCGTGCTA TTTATCATCA CAAAGTGTTG TCTGTTTTGT TTCTGGAAGT 1621 TTGCTAGAAA AGGAAAGAAG GGAAAAAGGG ATTTGCCAAC TTTCTTGTAC AAAGTtggca 1681 ttataagaaa gcattgctta tcaatttgtt gcaacgaac