Transcript: Human XM_017007660.2

PREDICTED: Homo sapiens UDP glucuronosyltransferase family 2 member B11 (UGT2B11), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UGT2B11 (10720)
Length:
1124
CDS:
260..1102

Additional Resources:

NCBI RefSeq record:
XM_017007660.2
NBCI Gene record:
UGT2B11 (10720)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017007660.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000429323 ATTCTTACCAAACGTTGATTT pLKO_005 319 CDS 100% 13.200 7.920 N UGT2B11 n/a
2 TRCN0000413333 TTGATCAACCTGATAACATTG pLKO_005 702 CDS 100% 10.800 6.480 N UGT2B11 n/a
3 TRCN0000036178 CGGGAATAAACCAGATGCCTT pLKO.1 532 CDS 100% 2.640 1.584 N UGT2B11 n/a
4 TRCN0000034732 CGAGCAGTCTTCTGGATTGAA pLKO.1 887 CDS 100% 5.625 2.813 Y UGT2B28 n/a
5 TRCN0000036176 CCTAAGGAAATGGAGGAGTTT pLKO.1 377 CDS 100% 4.950 2.475 Y UGT2B11 n/a
6 TRCN0000036206 CTGGTTCCAGTACCACTCTTT pLKO.1 964 CDS 100% 4.950 2.475 Y UGT2B7 n/a
7 TRCN0000036246 CCTCATCCATTCTTACCAAAT pLKO.1 311 CDS 100% 10.800 5.400 Y UGT2B10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017007660.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02514 pDONR223 100% 52.9% 52.9% None 0_1ins747 n/a
2 ccsbBroad304_02514 pLX_304 0% 52.9% 52.9% V5 0_1ins747 n/a
3 ccsbBroadEn_01752 pDONR223 100% 51.1% 50.5% None (many diffs) n/a
4 ccsbBroad304_01752 pLX_304 0% 51.1% 50.5% V5 (many diffs) n/a
5 ccsbBroadEn_13979 pDONR223 100% 49.6% 47.6% None (many diffs) n/a
6 ccsbBroad304_13979 pLX_304 0% 49.6% 47.6% V5 (not translated due to frame shift) (many diffs) n/a
7 TRCN0000480649 GTATCCTGATATGCGTTGCTGGGC pLX_317 26.8% 49.6% 47.6% V5 (not translated due to frame shift) (many diffs) n/a
8 ccsbBroadEn_10448 pDONR223 100% 48.8% 47.8% None (many diffs) n/a
9 ccsbBroad304_10448 pLX_304 0% 48.8% 47.8% V5 (not translated due to frame shift) (many diffs) n/a
10 TRCN0000471029 ATGCGTCAATATGTCCGATAACAC pLX_317 30.6% 48.8% 47.8% V5 (not translated due to frame shift) (many diffs) n/a
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