Transcript: Human NM_001290091.2

Homo sapiens UDP glucuronosyltransferase family 2 member B10 (UGT2B10), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
UGT2B10 (7365)
Length:
2192
CDS:
206..1048

Additional Resources:

NCBI RefSeq record:
NM_001290091.2
NBCI Gene record:
UGT2B10 (7365)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001290091.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000418378 CTTCAGCCTCAACTTACTAAG pLKO_005 1338 3UTR 100% 10.800 7.560 N UGT2B10 n/a
2 TRCN0000036247 CGCAGAATACAGCCTTTGGAT pLKO.1 113 5UTR 100% 3.000 1.800 N UGT2B10 n/a
3 TRCN0000036246 CCTCATCCATTCTTACCAAAT pLKO.1 257 CDS 100% 10.800 5.400 Y UGT2B10 n/a
4 TRCN0000034732 CGAGCAGTCTTCTGGATTGAA pLKO.1 833 CDS 100% 5.625 2.813 Y UGT2B28 n/a
5 TRCN0000036176 CCTAAGGAAATGGAGGAGTTT pLKO.1 323 CDS 100% 4.950 2.475 Y UGT2B11 n/a
6 TRCN0000036206 CTGGTTCCAGTACCACTCTTT pLKO.1 910 CDS 100% 4.950 2.475 Y UGT2B7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001290091.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01752 pDONR223 100% 53% 53% None 0_1ins744 n/a
2 ccsbBroad304_01752 pLX_304 0% 53% 53% V5 0_1ins744 n/a
3 ccsbBroadEn_02514 pDONR223 100% 51.1% 50.4% None (many diffs) n/a
4 ccsbBroad304_02514 pLX_304 0% 51.1% 50.4% V5 (many diffs) n/a
5 ccsbBroadEn_13979 pDONR223 100% 50.1% 48.5% None (many diffs) n/a
6 ccsbBroad304_13979 pLX_304 0% 50.1% 48.5% V5 (not translated due to frame shift) (many diffs) n/a
7 TRCN0000480649 GTATCCTGATATGCGTTGCTGGGC pLX_317 26.8% 50.1% 48.5% V5 (not translated due to frame shift) (many diffs) n/a
8 ccsbBroadEn_10448 pDONR223 100% 48.7% 47.8% None (many diffs) n/a
9 ccsbBroad304_10448 pLX_304 0% 48.7% 47.8% V5 (not translated due to frame shift) (many diffs) n/a
10 TRCN0000471029 ATGCGTCAATATGTCCGATAACAC pLX_317 30.6% 48.7% 47.8% V5 (not translated due to frame shift) (many diffs) n/a
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