Transcript: Human NM_001077.3

Homo sapiens UDP glucuronosyltransferase family 2 member B17 (UGT2B17), mRNA.

Source:
NCBI, updated 2019-09-23
Taxon:
Homo sapiens (human)
Gene:
UGT2B17 (7367)
Length:
2099
CDS:
44..1636

Additional Resources:

NCBI RefSeq record:
NM_001077.3
NBCI Gene record:
UGT2B17 (7367)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001077.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234591 ATGTTCGATAGATGGACATAT pLKO_005 320 CDS 100% 13.200 18.480 N UGT2B17 n/a
2 TRCN0000036313 TGTTCGATAGATGGACATATA pLKO.1 321 CDS 100% 13.200 18.480 N UGT2B17 n/a
3 TRCN0000370270 TACTGAGCTTCCTTATGTTTC pLKO_005 1917 3UTR 100% 10.800 8.640 N UGT2B17 n/a
4 TRCN0000234593 TGGGAATATTCTGACTATAAT pLKO_005 395 CDS 100% 15.000 10.500 N UGT2B17 n/a
5 TRCN0000234595 CTTATGGGCTTATATTGAAAT pLKO_005 1859 3UTR 100% 13.200 9.240 N UGT2B17 n/a
6 TRCN0000370269 GTACTTTAGTTGGAATTATTC pLKO_005 1795 3UTR 100% 13.200 9.240 N UGT2B17 n/a
7 TRCN0000234592 TAGATGGACATATAGTATTTC pLKO_005 328 CDS 100% 13.200 9.240 N UGT2B17 n/a
8 TRCN0000036309 CGATAGATGGACATATAGTAT pLKO.1 325 CDS 100% 5.625 3.938 N UGT2B17 n/a
9 TRCN0000370237 GCCTGAAGTGGAATGACCAAA pLKO_005 1648 3UTR 100% 4.950 3.465 N UGT2B17 n/a
10 TRCN0000036310 CGTGGCAACTATGATATTTAT pLKO.1 1546 CDS 100% 15.000 9.000 N UGT2B17 n/a
11 TRCN0000234594 TGGCAACTATGATATTTATGA pLKO_005 1548 CDS 100% 5.625 3.375 N UGT2B17 n/a
12 TRCN0000420898 GAATACAGCCATTGGATAAAT pLKO_005 137 CDS 100% 15.000 7.500 Y Ugt2b1 n/a
13 TRCN0000036272 CCAGTAAATCATCTGCTATTA pLKO.1 240 CDS 100% 13.200 6.600 Y UGT2B15 n/a
14 TRCN0000036207 CCTGTTGTTATGTCAGAATTA pLKO.1 629 CDS 100% 13.200 6.600 Y UGT2B7 n/a
15 TRCN0000036270 CGCCCATTCTTACCAAATGTT pLKO.1 848 CDS 100% 5.625 2.813 Y UGT2B15 n/a
16 TRCN0000036312 GCGGATCAACATGATAACATT pLKO.1 1235 CDS 100% 5.625 2.813 Y UGT2B17 n/a
17 TRCN0000036311 CCAAATACTTTAGGTTCCAAT pLKO.1 1076 CDS 100% 4.950 2.475 Y UGT2B17 n/a
18 TRCN0000034732 CGAGCAGTCTTCTGGATTGAA pLKO.1 1421 CDS 100% 5.625 2.813 Y UGT2B28 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001077.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01752 pDONR223 100% 85.6% 76.7% None (many diffs) n/a
2 ccsbBroad304_01752 pLX_304 0% 85.6% 76.7% V5 (many diffs) n/a
3 ccsbBroadEn_10448 pDONR223 100% 85.6% 77.9% None (many diffs) n/a
4 ccsbBroad304_10448 pLX_304 0% 85.6% 77.9% V5 (not translated due to frame shift) (many diffs) n/a
5 TRCN0000471029 ATGCGTCAATATGTCCGATAACAC pLX_317 30.6% 85.6% 77.9% V5 (not translated due to frame shift) (many diffs) n/a
6 ccsbBroadEn_13979 pDONR223 100% 85.5% 76.4% None (many diffs) n/a
7 ccsbBroad304_13979 pLX_304 0% 85.5% 76.4% V5 (not translated due to frame shift) (many diffs) n/a
8 TRCN0000480649 GTATCCTGATATGCGTTGCTGGGC pLX_317 26.8% 85.5% 76.4% V5 (not translated due to frame shift) (many diffs) n/a
9 ccsbBroadEn_02514 pDONR223 100% 85.1% 76.6% None (many diffs) n/a
10 ccsbBroad304_02514 pLX_304 0% 85.1% 76.6% V5 (many diffs) n/a
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