Transcript: Human XM_011531550.2

PREDICTED: Homo sapiens UDP glucuronosyltransferase family 2 member B11 (UGT2B11), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UGT2B11 (10720)
Length:
1375
CDS:
16..1353

Additional Resources:

NCBI RefSeq record:
XM_011531550.2
NBCI Gene record:
UGT2B11 (10720)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011531550.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427160 ATGATGCATCCACTCTTAAAT pLKO_005 215 CDS 100% 15.000 10.500 N UGT2B11 n/a
2 TRCN0000036177 CCTGTGGGAATTATATGACAT pLKO.1 360 CDS 100% 4.950 3.465 N UGT2B11 n/a
3 TRCN0000429323 ATTCTTACCAAACGTTGATTT pLKO_005 570 CDS 100% 13.200 7.920 N UGT2B11 n/a
4 TRCN0000413333 TTGATCAACCTGATAACATTG pLKO_005 953 CDS 100% 10.800 6.480 N UGT2B11 n/a
5 TRCN0000036175 CGCAGAATACAGCCATTGGAT pLKO.1 105 CDS 100% 3.000 1.800 N UGT2B11 n/a
6 TRCN0000036178 CGGGAATAAACCAGATGCCTT pLKO.1 783 CDS 100% 2.640 1.584 N UGT2B11 n/a
7 TRCN0000034732 CGAGCAGTCTTCTGGATTGAA pLKO.1 1138 CDS 100% 5.625 2.813 Y UGT2B28 n/a
8 TRCN0000036176 CCTAAGGAAATGGAGGAGTTT pLKO.1 628 CDS 100% 4.950 2.475 Y UGT2B11 n/a
9 TRCN0000036206 CTGGTTCCAGTACCACTCTTT pLKO.1 1215 CDS 100% 4.950 2.475 Y UGT2B7 n/a
10 TRCN0000036246 CCTCATCCATTCTTACCAAAT pLKO.1 562 CDS 100% 10.800 5.400 Y UGT2B10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011531550.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02514 pDONR223 100% 84.1% 84.1% None 468_469ins252 n/a
2 ccsbBroad304_02514 pLX_304 0% 84.1% 84.1% V5 468_469ins252 n/a
3 ccsbBroadEn_01752 pDONR223 100% 80.2% 77.5% None (many diffs) n/a
4 ccsbBroad304_01752 pLX_304 0% 80.2% 77.5% V5 (many diffs) n/a
5 ccsbBroadEn_13979 pDONR223 100% 77.4% 72.2% None (many diffs) n/a
6 ccsbBroad304_13979 pLX_304 0% 77.4% 72.2% V5 (not translated due to frame shift) (many diffs) n/a
7 TRCN0000480649 GTATCCTGATATGCGTTGCTGGGC pLX_317 26.8% 77.4% 72.2% V5 (not translated due to frame shift) (many diffs) n/a
8 ccsbBroadEn_10448 pDONR223 100% 76.1% 72.4% None (many diffs) n/a
9 ccsbBroad304_10448 pLX_304 0% 76.1% 72.4% V5 (not translated due to frame shift) (many diffs) n/a
10 TRCN0000471029 ATGCGTCAATATGTCCGATAACAC pLX_317 30.6% 76.1% 72.4% V5 (not translated due to frame shift) (many diffs) n/a
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