Construct: ORF ccsbBroadEn_01804
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016630.1_s300c1, BRDN0000387317
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF69 (7620)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7620 | ZNF69 | zinc finger protein 69 | NM_021915.4 | 100% | 100% | |
| 2 | human | 7620 | ZNF69 | zinc finger protein 69 | NM_001321163.2 | 91.4% | 91.4% | 63_104del |
| 3 | human | 7620 | ZNF69 | zinc finger protein 69 | XM_006722874.3 | 89.7% | 89.7% | 63_113del |
| 4 | human | 7620 | ZNF69 | zinc finger protein 69 | XM_017027231.1 | 89.7% | 89.7% | 63_113del |
| 5 | human | 284390 | ZNF763 | zinc finger protein 763 | NM_001367172.2 | 32.5% | 29.7% | (many diffs) |
| 6 | human | 284390 | ZNF763 | zinc finger protein 763 | NM_001367173.2 | 32.3% | 29.7% | (many diffs) |
| 7 | human | 284390 | ZNF763 | zinc finger protein 763 | NM_001012753.2 | 32.2% | 29.8% | (many diffs) |
| 8 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348719.1 | 27.5% | 25.1% | (many diffs) |
| 9 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348718.1 | 27.3% | 25% | (many diffs) |
| 10 | human | 7620 | ZNF69 | zinc finger protein 69 | NM_001364731.1 | 26.9% | 26.9% | 448_1656del |
| 11 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_152262.2 | 26.5% | 22.4% | (many diffs) |
| 12 | human | 7620 | ZNF69 | zinc finger protein 69 | NM_001364730.1 | 26.3% | 26.3% | 63_104del;490_1698del |
| 13 | human | 7620 | ZNF69 | zinc finger protein 69 | XM_006722873.4 | 26.1% | 26.1% | 63_113del;499_1707del |
| 14 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348720.1 | 25.8% | 22.6% | (many diffs) |
| 15 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348721.1 | 25.8% | 22.6% | (many diffs) |
| 16 | human | 126070 | ZNF440 | zinc finger protein 440 | NM_152357.3 | 22.1% | 20.1% | (many diffs) |
| 17 | human | 126070 | ZNF440 | zinc finger protein 440 | XM_005259731.4 | 21.8% | 20.1% | (many diffs) |
| 18 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348722.1 | 21.1% | 19.5% | (many diffs) |
| 19 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348723.1 | 21.1% | 19.5% | (many diffs) |
| 20 | human | 90592 | ZNF700 | zinc finger protein 700 | NM_144566.3 | 18.8% | 17.6% | (many diffs) |
| 21 | human | 90592 | ZNF700 | zinc finger protein 700 | NM_001271848.1 | 18.7% | 17.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 513
- ORF length:
- 447
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CTGCTGTAGT CACAGGAGGT GTAGAGAGGA CCCCGGGACA TCTGAAAGCC 121 AGGAAATGGA GGAGTGGGCT TTGCTGGATA TTTCCCAGAG GAAACTCTAC AAGGAAGTGA 181 TGCTGGAAAC TTTCAGGAAC CTGACCTCTG TAGGAAAAAG TTGGAAAGAC CAGAACATTG 241 AATATGAGTA CCAAAACCCC AGGAGAAACT TCAGGAGTCT CATAGAAAAG AAAGTCAATG 301 AAATTAAAGA TGACAGTCAT TGTGGAGAAA CTTTTACCCA GGTTCCAGAT GACAGGCTGA 361 ACTTCCAGGA GAAGAAAGCT TCTCCTGAAA TAAAATCATG TGACAGCTTT GTGTGTGGAG 421 AAGTTGGCCT AGGTAACTCA TCTTTTAATA TGAACATCAG AGGTGACATT GGACACAAGG 481 CCTATGAGTA TCAGGAATAT GGACCGAAGC CATACCCAAC TTTCTTGTAC AAAGTtggca 541 ttataagaaa gcattgctta tcaatttgtt gcaacgaac