Construct: ORF ccsbBroadEn_01823
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006310.1_s300c1, BRDN0000391434
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF230 (7773)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7773 | ZNF230 | zinc finger protein 230 | NM_006300.4 | 100% | 100% | |
| 2 | human | 7673 | ZNF222 | zinc finger protein 222 | XM_005259208.3 | 86.5% | 77.8% | (many diffs) |
| 3 | human | 7766 | ZNF223 | zinc finger protein 223 | NM_013361.6 | 85.9% | 78.2% | (many diffs) |
| 4 | human | 7766 | ZNF223 | zinc finger protein 223 | XM_017027258.1 | 85.9% | 78.2% | (many diffs) |
| 5 | human | 7766 | ZNF223 | zinc finger protein 223 | XM_017027259.1 | 85.9% | 78.2% | (many diffs) |
| 6 | human | 7673 | ZNF222 | zinc finger protein 222 | NM_001129996.2 | 85.2% | 76.1% | (many diffs) |
| 7 | human | 7673 | ZNF222 | zinc finger protein 222 | NM_013360.2 | 83.4% | 74.2% | (many diffs) |
| 8 | human | 7673 | ZNF222 | zinc finger protein 222 | XM_005259209.3 | 82% | 72.6% | (many diffs) |
| 9 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260486.1 | 78.2% | 70.8% | (many diffs) |
| 10 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260487.1 | 78.2% | 70.8% | (many diffs) |
| 11 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_003445.3 | 78.2% | 70.8% | (many diffs) |
| 12 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_198089.3 | 78.1% | 70.6% | (many diffs) |
| 13 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_005259215.4 | 78.1% | 70.6% | (many diffs) |
| 14 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260488.1 | 76.5% | 68.4% | (many diffs) |
| 15 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_011527278.3 | 76.4% | 68.3% | (many diffs) |
| 16 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_011527279.3 | 76.4% | 68.3% | (many diffs) |
| 17 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_017027248.2 | 76.4% | 68.3% | (many diffs) |
| 18 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_024451694.1 | 76.4% | 68.3% | (many diffs) |
| 19 | human | 7766 | ZNF223 | zinc finger protein 223 | XM_017027260.2 | 72.5% | 64.9% | (many diffs) |
| 20 | human | 7768 | ZNF225 | zinc finger protein 225 | NM_001321685.2 | 57.5% | 49.8% | (many diffs) |
| 21 | human | 7768 | ZNF225 | zinc finger protein 225 | NM_013362.4 | 57.5% | 49.8% | (many diffs) |
| 22 | human | 7768 | ZNF225 | zinc finger protein 225 | XM_011527285.2 | 57.5% | 49.8% | (many diffs) |
| 23 | human | 7768 | ZNF225 | zinc finger protein 225 | XM_011527286.2 | 57.5% | 49.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1491
- ORF length:
- 1422
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACCACATTC AAGGAGGCAG TGACCTTCAA GGATGTGGCT GTGTTCTTCA 121 CTGAGGAGGA ACTGGGGCTA CTGGACCCTG CCCAGAGGAA GCTGTACCAA GACGTGATGC 181 TTGAGAACTT CACGAACCTG CTGTCAGTGG GGCATCAACC ATTCCACCCT TTCCACTTCC 241 TAAGGGAAGA AAAGTTTTGG ATGATGGAGA CAGCAACCCA AAGAGAAGGA AATTCAGGCG 301 GCAAGACTAT TGCGGAAGCA GGACCACATG AAGACTGCCC TTGCCAGCAA ATCTGGGAAC 361 AAACTGCAAG TGACTTAACC CAGTCTCAAG ACTCCATCAT AAATAATTCT CACTTCTTTG 421 AACAAGGTGA TGTCCCCTCC CAGGTTGAGG CAGGACTATC TATAATTCAT ACAGGACAGA 481 AACCTTCACA GAATGGGAAG TGTAAACAGT CCTTCAGTGA TGTTGCCATC TTTGATCCTC 541 CTCAGCAGTT CCACTCAGGA GAGAAGTCTC ATACATGCAA TGAGTGTGGA AAAAGCTTCT 601 GTTACATCTC AGCTCTTCGT ATTCACCAGA GAGTTCACTT GAGAGAGAAA CTCTCTAAGT 661 GTGACATGCG TGGTAAGGAA TTCAGTCAGA GCTCATGTCT GCAAACTCGT GAGAGAGTCC 721 ACACTGGAGA GAAACCATTC AAATGTGAGC AATGTGGGAA AGGCTTCAGA TGTAGAGCGA 781 TACTTCAAGT TCACTGCAAA TTACACACAG GAGAGAAACC TTATATTTGT GAGAAATGTG 841 GGAGGGCCTT CATTCACGAT TTCCAGCTTC AGAAACATCA GATAATTCAT ACTGGGGAGA 901 AGCCGTTCAA ATGTGAAATA TGTGGTAAGA GCTTCTGCCT TAGGTCAAGT CTTAATAGGC 961 ATTGCATGGT CCACACAGCA GAGAAACTGT ACAAATCTGA GGAGTGTGGA AAAGGCTTCA 1021 CTGATAGCCT AGATTTGCAT AAGCATCAGA TAATTCACAC AGGACAGAAA CCGTACAATT 1081 GTAAAGAATG TGGGAAGAGC TTCAGATGGT CCTCATATCT TTTGATCCAT CAGCGAATCC 1141 ACAGTGGAGA AAAACCATAC AGATGTGAGG AGTGTGGGAA GGGCTACATT AGTAAGTCAG 1201 GTCTTAACTT GCACCAGAGG GTCCATACTG GAGAGAGACC TTATAATTGT AAGGAATGTG 1261 GGAAGAGCTT TAGCCGGGCT TCAAGTATTT TGAATCATAA GAAACTCCAC TGCCGGAAAA 1321 AACCCTTCAA ATGTGAGGAT TGTGGAAAGA GGCTTGTACA CCGGTCTTTC TGTAAAGACC 1381 AACAAGGAGA CCACAATGGA GAAAACTCAT CCAAATGTGA GGACTGTGGG AAGCGCTACA 1441 AGAGGCGCTT GAATCTGGAT ATAATTTTAT CATTATTTTT AAATGATATG TTGCCAACTT 1501 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac