Construct: ORF ccsbBroadEn_01893
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004331.1_s300c1, BRDN0000390483
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- H2AC16 (8332)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8332 | H2AC16 | H2A clustered histone 16 | NM_003511.2 | 100% | 100% | |
| 2 | human | 8969 | H2AC11 | H2A clustered histone 11 | NM_021064.4 | 91.5% | 100% | (many diffs) |
| 3 | human | 8329 | H2AC13 | H2A clustered histone 13 | NM_003509.2 | 91.2% | 100% | (many diffs) |
| 4 | human | 8330 | H2AC15 | H2A clustered histone 15 | NM_003510.2 | 91.2% | 100% | (many diffs) |
| 5 | human | 8336 | H2AC17 | H2A clustered histone 17 | NM_003514.2 | 90% | 100% | (many diffs) |
| 6 | human | 8334 | H2AC6 | H2A clustered histone 6 | NM_003512.3 | 89.4% | 98.4% | (many diffs) |
| 7 | human | 3013 | H2AC7 | H2A clustered histone 7 | NM_021065.3 | 88.7% | 99.2% | (many diffs) |
| 8 | human | 85235 | H2AC12 | H2A clustered histone 12 | NM_080596.2 | 88.4% | 98.4% | (many diffs) |
| 9 | human | 8331 | H2AC14 | H2A clustered histone 14 | NM_021066.2 | 88.4% | 97.6% | (many diffs) |
| 10 | human | 92815 | H2AW | H2A.W histone | NM_033445.2 | 86.9% | 97.6% | (many diffs) |
| 11 | human | 55766 | H2AJ | H2A.J histone | NM_177925.3 | 84.8% | 95.3% | (many diffs) |
| 12 | human | 8335 | H2AC4 | H2A clustered histone 4 | NM_003513.2 | 84.3% | 98.4% | (many diffs) |
| 13 | human | 723790 | H2AC19 | H2A clustered histone 19 | NM_001040874.1 | 84.3% | 98.4% | (many diffs) |
| 14 | human | 8337 | H2AC18 | H2A clustered histone 18 | NM_003516.2 | 84.3% | 98.4% | (many diffs) |
| 15 | human | 8338 | H2AC20 | H2A clustered histone 20 | NM_003517.2 | 84.1% | 96.9% | (many diffs) |
| 16 | human | 3012 | H2AC8 | H2A clustered histone 8 | NM_021052.2 | 83.5% | 98.4% | (many diffs) |
| 17 | human | 317772 | H2AC21 | H2A clustered histone 21 | NM_175065.2 | 80% | 94.6% | (many diffs) |
| 18 | human | 3014 | H2AX | H2A.X variant histone | NM_002105.2 | 77.4% | 83.9% | (many diffs) |
| 19 | mouse | 665433 | Hist1h2ao | histone cluster 1, H2ao | NM_001177544.2 | 90.5% | 98.4% | (many diffs) |
| 20 | mouse | 319171 | Hist1h2ap | histone cluster 1, H2ap | NM_178185.2 | 90.5% | 98.4% | (many diffs) |
| 21 | mouse | 319165 | Hist1h2ad | histone cluster 1, H2ad | NM_178188.4 | 90.5% | 98.4% | (many diffs) |
| 22 | mouse | 319191 | Hist1h2ai | histone cluster 1, H2ai | NM_178182.2 | 90.2% | 98.4% | (many diffs) |
| 23 | mouse | 319167 | Hist1h2ag | histone cluster 1, H2ag | NM_178186.3 | 90.2% | 98.4% | (many diffs) |
| 24 | mouse | 319170 | Hist1h2an | histone cluster 1, H2an | NM_178184.2 | 90% | 98.4% | (many diffs) |
| 25 | mouse | 319166 | Hist1h2ae | histone cluster 1, H2ae | NM_178187.4 | 89.7% | 98.4% | (many diffs) |
| 26 | mouse | 319164 | Hist1h2ac | histone cluster 1, H2ac | NM_178189.5 | 89.7% | 98.4% | (many diffs) |
| 27 | mouse | 319173 | Hist1h2af | histone cluster 1, H2af | NM_175661.2 | 89.5% | 97.6% | (many diffs) |
| 28 | mouse | 319172 | Hist1h2ab | histone cluster 1, H2ab | NM_175660.3 | 89.2% | 98.4% | (many diffs) |
| 29 | mouse | 319169 | Hist1h2ak | histone cluster 1, H2ak | NM_178183.2 | 89.2% | 97.6% | (many diffs) |
| 30 | mouse | 319168 | Hist1h2ah | histone cluster 1, H2ah | NM_175659.2 | 89.2% | 96.9% | (many diffs) |
| 31 | mouse | 15267 | Hist2h2aa1 | histone cluster 2, H2aa1 | NM_013549.2 | 88.4% | 98.4% | (many diffs) |
| 32 | mouse | 319192 | Hist2h2aa2 | histone cluster 2, H2aa2 | NM_178212.3 | 88.4% | 98.4% | (many diffs) |
| 33 | mouse | 319176 | Hist2h2ac | histone cluster 2, H2ac | NM_175662.2 | 87.9% | 96.9% | (many diffs) |
| 34 | mouse | 319162 | Hist3h2a | histone cluster 3, H2a | NM_178218.4 | 85.8% | 97.6% | (many diffs) |
| 35 | mouse | 232440 | H2afj | H2A histone family, member J | NM_177688.4 | 84.6% | 94.6% | (many diffs) |
| 36 | mouse | 621893 | Hist2h2ab | histone cluster 2, H2ab | NM_178213.4 | 81.2% | 93.8% | (many diffs) |
| 37 | mouse | 319163 | Hist1h2aa | histone cluster 1, H2aa | NM_175658.2 | 80.5% | 88.4% | (many diffs) |
| 38 | mouse | 15270 | H2afx | H2A histone family, member X | NM_010436.2 | 77.9% | 83.2% | (many diffs) |
| 39 | mouse | 667728 | Hist1h2al | histone cluster 1, H2al | NR_132443.1 | 11.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 456
- ORF length:
- 390
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GGGACGCGGC AAGCAGGGAG GCAAAGCTCG CGCCAAAGCC AAGACCCGCT 121 CTTCTCGTGC CGGTCTCCAG TTCCCCGTGG GCCGAGTGCA CCGACTGCTC CGCAAGGGCA 181 ACTATGCTGA GCGGGTCGGG GCCGGCGCGC CGGTGTACCT GGCGGCGGTG CTGGAGTACC 241 TGACTGCCGA GATCCTGGAG CTGGCGGGCA ACGCCGCCCG CGACAACAAG AAGACCCGCA 301 TTATCCCGCG CCACTTGCAG CTGGCCATCC GCAACGACGA GGAGCTCAAC AAGCTGCTGG 361 GCAAAGTAAC CATCGCTCAG GGTGGTGTCC TGCCCAACAT CCAGGCTGTG CTACTGCCCA 421 AGAAGACCGA GAGTCACCAC AAGGCCAAAG GCAAATACCC AACTTTCTTG TACAAAGTtg 481 gcattataag aaagcattgc ttatcaattt gttgcaacga ac