Construct: ORF ccsbBroadEn_02053

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013325.1_s300c1, BRDN0000396666
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BTRC (8945)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8945 BTRC beta-transducin repeat cont... NM_033637.4 100% 100%
2 human 8945 BTRC beta-transducin repeat cont... XM_017016871.1 97% 97% 0_1ins54
3 human 8945 BTRC beta-transducin repeat cont... XM_017016872.1 97% 97% 0_1ins54
4 human 8945 BTRC beta-transducin repeat cont... XM_017016873.2 97% 97% 0_1ins54
5 human 8945 BTRC beta-transducin repeat cont... NM_001256856.1 95.7% 95.7% 153_154ins78
6 human 8945 BTRC beta-transducin repeat cont... NM_003939.5 94% 94% 47_48ins108
7 human 8945 BTRC beta-transducin repeat cont... XM_017016874.1 89.7% 89.7% 47_48ins186
8 human 8945 BTRC beta-transducin repeat cont... XM_011540320.2 86.2% 80.1% (many diffs)
9 human 8945 BTRC beta-transducin repeat cont... XM_024448246.1 83.6% 83.6% 0_1ins297
10 human 8945 BTRC beta-transducin repeat cont... XM_024448247.1 83.6% 83.6% 0_1ins297
11 human 8945 BTRC beta-transducin repeat cont... XM_006718054.2 82.6% 82.6% 48_428del
12 human 8945 BTRC beta-transducin repeat cont... XM_017016870.1 79% 79% 48_428del;534_535ins78
13 human 8945 BTRC beta-transducin repeat cont... XR_001747256.1 26.6% (many diffs)
14 mouse 12234 Btrc beta-transducin repeat cont... NM_001037758.2 90.8% 98.6% (many diffs)
15 mouse 12234 Btrc beta-transducin repeat cont... NM_001286465.1 90.8% 98.6% (many diffs)
16 mouse 12234 Btrc beta-transducin repeat cont... XM_006526607.3 88.7% 96.4% (many diffs)
17 mouse 12234 Btrc beta-transducin repeat cont... XM_011247120.2 88.1% 95.7% (many diffs)
18 mouse 12234 Btrc beta-transducin repeat cont... XM_017318046.1 88.1% 95.7% (many diffs)
19 mouse 12234 Btrc beta-transducin repeat cont... XM_006526608.2 86.5% 94.3% (many diffs)
20 mouse 12234 Btrc beta-transducin repeat cont... XM_011247122.2 86.5% 92.9% (many diffs)
21 mouse 12234 Btrc beta-transducin repeat cont... XM_011247121.2 85.1% 88.4% (many diffs)
22 mouse 12234 Btrc beta-transducin repeat cont... NM_009771.3 84.9% 92.7% (many diffs)
23 mouse 12234 Btrc beta-transducin repeat cont... XM_006526610.3 84.5% 92.2% (many diffs)
24 mouse 12234 Btrc beta-transducin repeat cont... XM_011247119.2 84.4% 91.9% (many diffs)
25 mouse 12234 Btrc beta-transducin repeat cont... XM_011247123.2 82.5% 88.9% (many diffs)
26 mouse 12234 Btrc beta-transducin repeat cont... XM_006526612.2 80.6% 88.4% (many diffs)
27 mouse 12234 Btrc beta-transducin repeat cont... XM_006526613.2 80.4% 88% (many diffs)
28 mouse 12234 Btrc beta-transducin repeat cont... XM_006526614.3 80.2% 87.7% (many diffs)
29 mouse 12234 Btrc beta-transducin repeat cont... XM_006526615.2 75.1% 82.6% (many diffs)
30 mouse 12234 Btrc beta-transducin repeat cont... XM_011247127.2 75.1% 82.6% (many diffs)
31 mouse 12234 Btrc beta-transducin repeat cont... NM_001286466.1 56.8% 62.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1881
ORF length:
1815
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CCCGGCCGAG GCGGTGCTGC AAGAGAAGGC ACTCAAGTTT ATGTGCTCTA
121TGCCCAGGTC TCTGTGGCTG GGCTGCTCCA GCCTGGCGGA CAGCATGCCT TCGCTGCGAT
181GCCTGTATAA CCCAGGGACT GGCGCACTCA CAGCTTTCCA GAATTCCTCA GAGAGAGAAG
241ACTGTAATAA TGGCGAACCC CCTAGGAAGA TAATACCAGA GAAGAATTCA CTTAGACAGA
301CATACAACAG CTGTGCCAGA CTCTGCTTAA ACCAAGAAAC AGTATGTTTA GCAAGCACTG
361CTATGAAGAC TGAGAATTGT GTGGCCAAAA CAAAACTTGC CAATGGCACT TCCAGTATGA
421TTGTGCCCAA GCAACGGAAA CTCTCAGCAA GCTATGAAAA GGAAAAGGAA CTGTGTGTCA
481AATACTTTGA GCAGTGGTCA GAGTCAGATC AAGTGGAATT TGTGGAACAT CTTATATCCC
541AAATGTGTCA TTACCAACAT GGGCACATAA ACTCGTATCT TAAACCTATG TTGCAGAGAG
601ATTTCATAAC TGCTCTGCCA GCTCGGGGAT TGGATCATAT TGCTGAGAAC ATTCTGTCAT
661ACCTGGATGC CAAATCACTA TGTGCTGCTG AACTTGTGTG CAAGGAATGG TACCGAGTGA
721CCTCTGATGG CATGCTGTGG AAGAAGCTTA TCGAGAGAAT GGTCAGGACA GATTCTCTGT
781GGAGAGGCCT GGCAGAACGA AGAGGATGGG GACAGTATTT ATTCAAAAAC AAACCTCCTG
841ACGGGAATGC TCCTCCCAAC TCTTTTTATA GAGCACTTTA TCCTAAAATT ATACAAGACA
901TTGAGACAAT AGAATCTAAT TGGAGATGTG GAAGACATAG TTTACAGAGA ATTCACTGCC
961GAAGTGAAAC AAGCAAAGGA GTTTACTGTT TACAGTATGA TGATCAGAAA ATAGTAAGCG
1021GCCTTCGAGA CAACACAATC AAGATCTGGG ATAAAAACAC ATTGGAATGC AAGCGAATTC
1081TCACAGGCCA TACAGGTTCA GTCCTCTGTC TCCAGTATGA TGAGAGAGTG ATCATAACAG
1141GATCATCGGA TTCCACGGTC AGAGTGTGGG ATGTAAATAC AGGTGAAATG CTAAACACGT
1201TGATTCACCA TTGTGAAGCA GTTCTGCACT TGCGTTTCAA TAATGGCATG ATGGTGACCT
1261GCTCCAAAGA TCGTTCCATT GCTGTATGGG ATATGGCCTC CCCAACTGAC ATTACCCTCC
1321GGAGGGTGCT GGTCGGACAC CGAGCTGCTG TCAATGTTGT AGACTTTGAT GACAAGTACA
1381TTGTTTCTGC ATCTGGGGAT AGAACTATAA AGGTATGGAA CACAAGTACT TGTGAATTTG
1441TAAGGACCTT AAATGGACAC AAACGAGGCA TTGCCTGTTT GCAGTACAGG GACAGGCTGG
1501TAGTGAGTGG CTCATCTGAC AACACTATCA GATTATGGGA CATAGAATGT GGTGCATGTT
1561TACGAGTGTT AGAAGGCCAT GAGGAATTGG TGCGTTGTAT TCGATTTGAT AACAAGAGGA
1621TAGTCAGTGG GGCCTATGAT GGAAAAATTA AAGTGTGGGA TCTTGTGGCT GCTTTGGACC
1681CCCGTGCTCC TGCAGGGACA CTCTGTCTAC GGACCCTTGT GGAGCATTCC GGAAGAGTTT
1741TTCGACTACA GTTTGATGAA TTCCAGATTG TCAGTAGTTC ACATGATGAC ACAATCCTCA
1801TCTGGGACTT CCTAAATGAT CCAGCTGCCC AAGCTGAACC CCCCCGTTCC CCTTCTCGAA
1861CATACACCTA CATCTCCAGA TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1921attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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