Construct: ORF ccsbBroadEn_02460

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007554.1_s300c1, BRDN0000395677
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATG7 (10533)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10533 ATG7 autophagy related 7 NM_001136031.3 100% 100%
2 human 10533 ATG7 autophagy related 7 XM_011533286.2 100% 100%
3 human 10533 ATG7 autophagy related 7 XM_017005551.1 98.9% 98.6% (many diffs)
4 human 10533 ATG7 autophagy related 7 NM_001349232.2 96.1% 96.1% 1876_1956del
5 human 10533 ATG7 autophagy related 7 NM_001349233.2 96.1% 96.1% 1876_1956del
6 human 10533 ATG7 autophagy related 7 NM_001349234.2 96.1% 96.1% 1876_1956del
7 human 10533 ATG7 autophagy related 7 NM_001349235.2 96.1% 96.1% 1876_1956del
8 human 10533 ATG7 autophagy related 7 NM_006395.3 96.1% 96.1% 1876_1956del
9 human 10533 ATG7 autophagy related 7 XM_011533283.2 95.1% 94.8% (many diffs)
10 human 10533 ATG7 autophagy related 7 XM_017005548.1 95.1% 94.8% (many diffs)
11 human 10533 ATG7 autophagy related 7 XM_017005547.2 94.9% 94.2% (many diffs)
12 human 10533 ATG7 autophagy related 7 XM_011533284.2 94.7% 94.7% 1876_1956del;2080_2081delCAinsAT;2082_2083ins27
13 human 10533 ATG7 autophagy related 7 XM_011533281.2 94.5% 93.1% (many diffs)
14 human 10533 ATG7 autophagy related 7 XM_011533280.2 94.2% 93.1% (many diffs)
15 human 10533 ATG7 autophagy related 7 XM_017005543.1 94.2% 93.1% (many diffs)
16 human 10533 ATG7 autophagy related 7 XM_011533279.2 91.7% 90.7% (many diffs)
17 human 10533 ATG7 autophagy related 7 XM_024453312.1 91.7% 90.7% (many diffs)
18 human 10533 ATG7 autophagy related 7 XM_006712931.4 90.7% 89.7% (many diffs)
19 human 10533 ATG7 autophagy related 7 XM_006712932.4 90.7% 89.7% (many diffs)
20 human 10533 ATG7 autophagy related 7 XM_006712933.3 90.7% 89.7% (many diffs)
21 human 10533 ATG7 autophagy related 7 XM_011533277.3 90.7% 89.7% (many diffs)
22 human 10533 ATG7 autophagy related 7 XM_011533278.2 90.7% 89.7% (many diffs)
23 human 10533 ATG7 autophagy related 7 XM_017005542.1 90.7% 89.7% (many diffs)
24 human 10533 ATG7 autophagy related 7 NM_001349236.2 90.6% 90.6% 411_412ins117;1759_1839del
25 human 10533 ATG7 autophagy related 7 NM_001144912.2 90.2% 88.4% (many diffs)
26 human 10533 ATG7 autophagy related 7 NM_001349237.2 88.6% 88.6% 1123_1124ins159;1717_1797del
27 human 10533 ATG7 autophagy related 7 XM_017005550.1 84.5% 83.5% (many diffs)
28 human 10533 ATG7 autophagy related 7 XM_011533285.3 83.6% 82.6% (many diffs)
29 human 10533 ATG7 autophagy related 7 XM_017005549.2 83.6% 82.6% (many diffs)
30 human 10533 ATG7 autophagy related 7 XR_001739980.2 80.1% (many diffs)
31 human 10533 ATG7 autophagy related 7 XR_940363.2 69% (many diffs)
32 human 10533 ATG7 autophagy related 7 XM_024453315.1 51.9% 51.9% 0_1ins933;943_1023del
33 human 10533 ATG7 autophagy related 7 NM_001349238.2 50.9% 50.2% (many diffs)
34 human 10533 ATG7 autophagy related 7 XM_024453313.1 48.7% 47.9% (many diffs)
35 human 10533 ATG7 autophagy related 7 XM_024453314.1 48.7% 47.9% (many diffs)
36 mouse 74244 Atg7 autophagy related 7 NM_001253718.1 82.3% 88.7% (many diffs)
37 mouse 74244 Atg7 autophagy related 7 NM_028835.4 82.3% 88.7% (many diffs)
38 mouse 74244 Atg7 autophagy related 7 XM_006506709.2 82.3% 88.7% (many diffs)
39 mouse 74244 Atg7 autophagy related 7 XM_006506710.3 82.3% 88.7% (many diffs)
40 mouse 74244 Atg7 autophagy related 7 XM_011241494.2 82.3% 88.7% (many diffs)
41 mouse 74244 Atg7 autophagy related 7 XM_011241495.2 82.3% 88.7% (many diffs)
42 mouse 74244 Atg7 autophagy related 7 XM_006506708.3 81.3% 87.4% (many diffs)
43 mouse 74244 Atg7 autophagy related 7 NM_001253717.1 78.3% 84.2% (many diffs)
44 mouse 74244 Atg7 autophagy related 7 XM_006506707.2 78.3% 84.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2094
ORF length:
2028
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGCAGCTACG GGGGATCCTG GACTCTCTAA ACTGCAGTTT GCCCCTTTTA
121GTAGTGCCTT GGATGTTGGG TTTTGGCATG AGTTGACCCA GAAGAAGCTG AACGAGTATC
181GGCTGGATGA AGCTCCCAAG GACATTAAGG GTTATTACTA CAATGGTGAC TCTGCTGGGC
241TGCCAGCTCG CTTAACATTG GAGTTCAGTG CTTTTGACAT GAGTGCTCCC ACCCCAGCCC
301GTTGCTGCCC AGCTATTGGA ACACTGTATA ACACCAACAC ACTCGAGTCT TTCAAGACTG
361CAGATAAGAA GCTCCTTTTG GAACAAGCAG CAAATGAGAT ATGGGAATCC ATAAAATCAG
421GCACTGCTCT TGAAAACCCT GTACTCCTCA ACAAGTTCCT CCTCTTGACA TTTGCAGATC
481TAAAGAAGTA CCACTTCTAC TATTGGTTTT GCTATCCTGC CCTCTGTCTT CCAGAGAGTT
541TACCTCTCAT TCAGGGGCCA GTGGGTTTGG ATCAAAGGTT TTCACTAAAA CAGATTGAAG
601CACTAGAGTG TGCATATGAT AATCTTTGTC AAACAGAAGG AGTCACAGCT CTTCCTTACT
661TCTTAATCAA GTATGATGAG AACATGGTGC TGGTTTCCTT GCTTAAACAC TACAGTGATT
721TCTTCCAAGG TCAAAGGACG AAGATAACAA TTGGTGTATA TGATCCCTGT AACTTAGCCC
781AGTACCCTGG ATGGCCTTTG AGGAATTTTT TGGTCCTAGC AGCCCACAGA TGGAGTAGCA
841GTTTCCAGTC TGTTGAAGTT GTTTGCTTCC GTGACCGTAC CATGCAGGGG GCGAGAGACG
901TTGCCCACAG CATCATCTTC GAAGTGAAGC TTCCAGAAAT GGCATTTAGC CCAGATTGTC
961CTAAAGCAGT TGGATGGGAA AAGAACCAGA AAGGAGGCAT GGGACCAAGG ATGGTGAACC
1021TCAGTGAATG TATGGACCCT AAAAGGTTAG CTGAGTCATC AGTGGATCTA AATCTCAAAC
1081TGATGTGTTG GAGATTGGTT CCTACTTTAG ACTTGGACAA GGTTGTGTCT GTCAAATGTC
1141TGCTGCTTGG AGCCGGCACC TTGGGTTGCA ATGTAGCTAG GACGTTGATG GGTTGGGGCG
1201TGAGACACAT CACATTTGTG GACAATGCCA AGATCTCCTA CTCCAATCCT GTGAGGCAGC
1261CTCTCTATGA GTTTGAAGAT TGCCTAGGGG GTGGTAAGCC CAAGGCTCTG GCAGCAGCGG
1321ACCGGCTCCA GAAAATATTC CCCGGTGTGA ATGCCAGAGG ATTCAACATG AGCATACCTA
1381TGCCTGGGCA TCCAGTGAAC TTCTCCAGTG TCACTCTGGA GCAAGCCCGC AGAGATGTGG
1441AGCAACTGGA GCAGCTCATC GAAAGCCATG ATGTCGTCTT CCTATTGATG GACACCAGGG
1501AGAGCCGGTG GCTTCCTGCC GTCATTGCTG CAAGCAAGAG AAAGCTGGTC ATCAATGCTG
1561CTTTGGGATT TGACACATTT GTTGTCATGA GACATGGTCT GAAGAAACCA AAGCAGCAAG
1621GAGCTGGGGA CTTGTGTCCA AACCACCCTG TGGCATCTGC TGACCTCCTG GGCTCATCGC
1681TTTTTGCCAA CATCCCTGGT TACAAGCTTG GCTGCTACTT CTGCAATGAT GTGGTGGCCC
1741CAGGAGATTC AACCAGAGAC CGGACCTTGG ACCAGCAGTG CACTGTGAGT CGTCCAGGAC
1801TGGCCGTGAT TGCAGGAGCC CTGGCCGTGG AATTGATGGT ATCTGTTTTG CAGCATCCAG
1861AAGGGGGCTA TGCCATTGCC AGCAGCAGTG ACGATCGGAT GAATGAGCCT CCAACCTCTC
1921TTGGGCTTGT GCCTCACCAG GTTCTTGATC AATATGAACG AGAAGGATTT AACTTCCTAG
1981CCAAGGTGTT TAATTCTTCA CATTCCTTCT TAGAAGACTT GACTGGTCTT ACATTGCTGC
2041ATCAAGAAAC CCAAGCTGCT GAGATCTGGG ACATGAGCGA TGATGAGACC ATCTGCCCAA
2101CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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