Construct: ORF ccsbBroadEn_02514
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016717.1_s300c1, BRDN0000394768
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UGT2B11 (10720)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10720 | UGT2B11 | UDP glucuronosyltransferase... | NM_001073.3 | 100% | 100% | |
| 2 | human | 54490 | UGT2B28 | UDP glucuronosyltransferase... | NM_053039.2 | 97% | 94.7% | (many diffs) |
| 3 | human | 7365 | UGT2B10 | UDP glucuronosyltransferase... | NM_001075.6 | 94.9% | 90.5% | (many diffs) |
| 4 | human | 7365 | UGT2B10 | UDP glucuronosyltransferase... | XM_017008585.2 | 94.3% | 89.9% | (many diffs) |
| 5 | human | 7364 | UGT2B7 | UDP glucuronosyltransferase... | NM_001074.4 | 91.8% | 85.6% | (many diffs) |
| 6 | human | 7363 | UGT2B4 | UDP glucuronosyltransferase... | NM_021139.3 | 90.2% | 85.8% | (many diffs) |
| 7 | human | 7367 | UGT2B17 | UDP glucuronosyltransferase... | NM_001077.3 | 85.1% | 76.6% | (many diffs) |
| 8 | human | 7367 | UGT2B17 | UDP glucuronosyltransferase... | XM_024454205.1 | 85.1% | 76.6% | (many diffs) |
| 9 | human | 7366 | UGT2B15 | UDP glucuronosyltransferase... | NM_001076.4 | 84.8% | 76.7% | (many diffs) |
| 10 | human | 10720 | UGT2B11 | UDP glucuronosyltransferase... | XM_011531550.2 | 84.1% | 84.1% | 468_469ins252 |
| 11 | human | 7365 | UGT2B10 | UDP glucuronosyltransferase... | NM_001144767.3 | 80.2% | 77.5% | (many diffs) |
| 12 | human | 54490 | UGT2B28 | UDP glucuronosyltransferase... | XM_017008303.1 | 71.7% | 70.3% | (many diffs) |
| 13 | human | 7363 | UGT2B4 | UDP glucuronosyltransferase... | NM_001297616.1 | 67.5% | 62.8% | (many diffs) |
| 14 | human | 7364 | UGT2B7 | UDP glucuronosyltransferase... | NM_001330719.1 | 62.9% | 56.5% | (many diffs) |
| 15 | human | 7363 | UGT2B4 | UDP glucuronosyltransferase... | NM_001297615.2 | 61.9% | 56.7% | (many diffs) |
| 16 | human | 54490 | UGT2B28 | UDP glucuronosyltransferase... | NM_001207004.2 | 61.3% | 59.9% | (many diffs) |
| 17 | human | 10720 | UGT2B11 | UDP glucuronosyltransferase... | XM_017007660.2 | 52.9% | 52.9% | 0_1ins747 |
| 18 | human | 7365 | UGT2B10 | UDP glucuronosyltransferase... | NM_001290091.2 | 51.1% | 50.4% | (many diffs) |
| 19 | human | 7364 | UGT2B7 | UDP glucuronosyltransferase... | NM_001349568.1 | 49.7% | 48.2% | (many diffs) |
| 20 | human | 101929773 | LOC101929773 | UDP-glucuronosyltransferase... | XM_005275640.3 | 35.5% | 34.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1656
- ORF length:
- 1587
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACTCTGAAA TGGACTTCAG TTCTTCTGCT GATACATCTC AGTTGTTACT 121 TTAGCTCTGG GAGTTGTGGA AAAGTGCTGG TGTGGGCCGC AGAATACAGC CATTGGATGA 181 ATATGAAGAC AATCCTGAAA GAGCTTGTTC AGAGAGGTCA TGAGGTGACT GTACTGGCAT 241 CTTCAGCTTC CATTCTTTTT GATCCCAATG ATGCATCCAC TCTTAAATTT GAAGTTTATC 301 CTACATCTTT AACTAAAACT GAATTTGAGA ATATCATCAT GCAACAGGTT AAGAGATGGT 361 CAGACATTCG AAAAGATAGC TTTTGGTTAT ATTTTTCACA AGAACAAGAA ATCCTGTGGG 421 AATTATATGA CATATTTAGA AACTTCTGTA AAGATGTAGT TTCAAATAAG AAAGTTATGA 481 AAAAACTACA AGAGTCAAGA TTTGACATCG TTTTTGCAGA TGCTGTTTTT CCCTGTGGTG 541 AGCTGCTGGC TGCGCTACTT AACATACGGT TTGTGTACAG TCTCCGCTTT ACTCCTGGCT 601 ACACAATTGA AAGGCACAGT GGAGGACTGA TTTTCCCTCC TTCCTACATA CCTATTGTTA 661 TGTCAAAATT AAGTGATCAA ATGACTTTCA TGGAGAGGGT AAAAAATATG ATCTATGTGC 721 TTTATTTTGA CTTTTGGTTC CAAATGTCTG ATATGAAGAA GTGGGATCAG TTTTACAGTG 781 AAGTTTTAGG AAGACCCACT ACCTTATTTG AGACAATGGG AAAAGCTGAC ATATGGCTTA 841 TGCGAAACTC CTGGAGTTTT CAATTTCCTC ATCCATTCTT ACCAAACGTT GATTTTGTTG 901 GAGGATTCCA CTGCAAACCT GCCAAACCCC TACCTAAGGA AATGGAGGAG TTTGTACAGA 961 GCTCTGGAGA AAATGGTGTT GTGGTGTTTT CTCTGGGGTC AGTGATAAGT AACATGACAG 1021 CAGAAAGGGC CAATGTAATT GCAACAGCCC TTGCCAAGAT CCCACAAAAG GTTCTGTGGA 1081 GATTTGACGG GAATAAACCA GATGCCTTAG GTCTCAATAC TCGGCTGTAC AAGTGGATAC 1141 CCCAGAATGA CCTTCTAGGT CATCCAAAAA CCAGAGCTTT TATAACTCAT GGTGGAGCCA 1201 ATGGCATCTA TGAGGCAATC TACCATGGGA TCCCTATGGT GGGCATTCCA TTGTTTTTTG 1261 ATCAACCTGA TAACATTGCT CACATGAAGG CCAAGGGAGC AGCTGTTAGA TTGGACTTCA 1321 ACACAATGTC GAGTACAGAC CTGCTGAATG CACTGAAGAC AGTAATTAAT GATCCTTTAT 1381 ATAAAGAGAA TATTATGAAA TTATCAAGAA TTCAACATGA TCAACCAGTA AAGCCCCTGG 1441 ATCGAGCAGT CTTCTGGATT GAATTTGTCA TGCCCCACAA AGGAGCCAAA CACCTTCGAG 1501 TTGCAGCCCA TGACCTCACC TGGTTCCAGT ACCACTCTTT GGATGTGATT GGGTTTCTGC 1561 TGGCCTGTGT GGCAACTGTG ATATTTATCA TCACAAAGTT TTGTCTGTTT TGTTTCTGGA 1621 AGTTTGCTAG AAAAGGGAAG AAGGGAAAAA GAGATTTGCC AACTTTCTTG TACAAAGTtg 1681 gcattataag aaagcattgc ttatcaattt gttgcaacga ac