Construct: ORF ccsbBroadEn_03960

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008530.1_s300c1, BRDN0000386592
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CTAGE1 (64693)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64693 CTAGE1 cutaneous T cell lymphoma-a... NM_172241.3 99.9% 100% 2022A>G
2 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354148.1 90.6% 84.9% (many diffs)
3 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354137.1 90.1% 85.1% (many diffs)
4 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354138.1 90.1% 85.1% (many diffs)
5 human 4253 MIA2 MIA SH3 domain ER export fa... NM_203356.2 90.1% 85.1% (many diffs)
6 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021317.2 88.5% 83.6% (many diffs)
7 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021318.1 88.5% 83.6% (many diffs)
8 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021319.1 88.5% 83.6% (many diffs)
9 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021330.1 88.5% 83.6% (many diffs)
10 human 4253 MIA2 MIA SH3 domain ER export fa... NM_203354.3 88.2% 83.3% (many diffs)
11 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354150.2 87.5% 82.7% (many diffs)
12 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354154.2 87.3% 81.8% (many diffs)
13 human 4253 MIA2 MIA SH3 domain ER export fa... XM_011536778.2 87.2% 82.3% (many diffs)
14 human 4253 MIA2 MIA SH3 domain ER export fa... NM_005930.4 86.9% 82% (many diffs)
15 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354147.1 86.8% 81.9% (many diffs)
16 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021316.1 86.6% 81.8% (many diffs)
17 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001247989.1 86.3% 81.5% (many diffs)
18 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021315.2 86% 81.2% (many diffs)
19 human 643854 CTAGE9 CTAGE family member 9 NM_001145659.1 85.9% 75.1% (many diffs)
20 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354151.2 85.9% 81.1% (many diffs)
21 human 100142659 CTAGE8 CTAGE family member 8 NM_001278507.1 85.8% 75.1% (many diffs)
22 human 100128553 CTAGE4 CTAGE family member 4 NM_198495.2 85.8% 74.9% (many diffs)
23 human 441294 CTAGE15 CTAGE family member 15 NM_001008747.2 85.7% 75.1% (many diffs)
24 human 340307 CTAGE6 CTAGE family member 6 NM_178561.5 85.6% 74.9% (many diffs)
25 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021314.1 85.4% 80.6% (many diffs)
26 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001247988.1 84.9% 80.1% (many diffs)
27 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354139.1 84.9% 80.1% (many diffs)
28 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354140.2 84.4% 79.8% (many diffs)
29 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354141.2 84.4% 79.8% (many diffs)
30 human 4253 MIA2 MIA SH3 domain ER export fa... XM_011536785.2 84.4% 79.8% (many diffs)
31 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001247990.2 83.9% 79.3% (many diffs)
32 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354157.2 83.7% 78.9% (many diffs)
33 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354146.2 83% 78.4% (many diffs)
34 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021323.1 82.9% 78.4% (many diffs)
35 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021324.2 82.9% 78.4% (many diffs)
36 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449598.1 82.9% 78.4% (many diffs)
37 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354155.2 82.1% 76.9% (many diffs)
38 human 4253 MIA2 MIA SH3 domain ER export fa... NM_203355.3 81.8% 77.2% (many diffs)
39 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354149.1 81.5% 76.9% (many diffs)
40 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354156.2 81.1% 76.6% (many diffs)
41 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354152.2 80.9% 76.3% (many diffs)
42 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354145.2 79.4% 74.4% (many diffs)
43 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354142.1 79.2% 74.8% (many diffs)
44 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354143.1 79.2% 74.8% (many diffs)
45 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354144.2 79.2% 74.8% (many diffs)
46 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021327.1 79.2% 74.8% (many diffs)
47 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354153.2 78.6% 74.1% (many diffs)
48 human 112268382 LOC112268382 cTAGE family member 4-like XR_002959124.1 76.4% (many diffs)
49 human 647288 CTAGE11P CTAGE family member 11, pse... NR_027466.1 75% (many diffs)
50 human 119437 CTAGE7P CTAGE family member 7, pseu... NR_044994.1 72.1% (many diffs)
51 human 220429 CTAGE10P CTAGE family member 10, pse... NR_003268.3 69.8% (many diffs)
52 human 4253 MIA2 MIA SH3 domain ER export fa... NR_148723.2 57.7% (many diffs)
53 human 4253 MIA2 MIA SH3 domain ER export fa... NR_148722.2 57.1% (many diffs)
54 human 4253 MIA2 MIA SH3 domain ER export fa... NR_148721.1 55.6% (many diffs)
55 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001329214.3 49.4% 46.7% (many diffs)
56 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449594.1 49.3% 46.5% (many diffs)
57 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449593.1 49.1% 46.4% (many diffs)
58 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449592.1 49% 46.2% (many diffs)
59 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449596.1 46.6% 43.9% (many diffs)
60 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449595.1 46.1% 43.5% (many diffs)
61 human 4253 MIA2 MIA SH3 domain ER export fa... XR_002957555.1 37% (many diffs)
62 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449597.1 36.6% 33.2% (many diffs)
63 human 4253 MIA2 MIA SH3 domain ER export fa... XR_002957554.1 21.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2301
ORF length:
2235
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACGAAAAAG
61TTGGCATGAG ACCCGATTCT CATCCTTATG GTTTTCCATG GGAATTGGTG ATACGTGCAG
121CTGTTGCTGG ATTTTTTGCT GTTCTCTTCT TGTGGAGAAG TTTTAGATCA GTTACGAGTC
181GGCTTTATGT GAGAAGAGAG AAAAAGTTTG CTGTGGCACT TTCTGGACTA ATTGAAGAAA
241AATGTAAACT ACTTGAAAAA TTTAGCCTTG TTCAAAAAGA GTATGAAGGC TATGAAGTAG
301AGTCATCTTT AAAGAATGCC AGCTTTGAGA AGGAGGCAAC AGAAGCACAA AGTTTGGAGG
361CAACCTGCGA AAAGCTGAAC AGGTTCAATT CTGAACTTGT GCATGAAATA CTCTGTCTAG
421AAAAAGAGTT AAAAGAAGAG AAATCTAAAC ATTCTGAACA AAATGAATTG ATGGCGGATA
481TTTCCAAAAG GATACAGTCG CTAGAAGATG AGTCAAAATC CCTCAAATCA CAAGTAGCTG
541AAGCCAAAAT GACCTTCAAG AGATTTCAAG CGAATGAAGA ACGGTTGGAG ATAGAAATAC
601AAGATGCTTG GAAAGAAAAT TCTGAACTTC AGGAAAGCCA GAAACAGCTT TTGCAAGAAG
661CTGAAGTATG GAAAGAACAA GTGAGTGAAC TTATTAAACA GAAAAGAACA TTTGAAGACT
721CCAAAGTACA TGCAGAACAA GTTCTAAATG ATAAAGAAAA TCACATCAAG ACTCTGACTG
781AACGCTTGCT AAAGATGAAA GATGGGGTTG CTATGCTTGA AGAAGATGTA ACGGATGATG
841ATAACTTGGA ATTAGAAATG AACAGTGAAT CGGAAGATGG TGCTTACTTA GATAATCCTC
901CAAAAGGAGC TTTGAAGAAA CTGATTCATG CTGCTAAGTT AAATGCTTCC TTAAAAACCT
961TAGAAGGAGA AAGAAACCAA ATTTATATTC AATTATCTGA AGTTGATAAA ACAAAGGAAG
1021AGCTTACAGA GCATATTAAA AATCTTCAGA CTGAACAAGC ATCTTTGCAG TCAGAAAACA
1081CACATTTTGA AAGTGAGAAT CAGAAGCTTC AGCAGAAACT TAAAGTAATG ACTGAATTAT
1141ATCAAGAAAA TGAAATGAAA CTCTACAGGA AATTAATAGT AGAGGAAAAA TGCCGGTTAG
1201AGAAAGAAGA GAAACTTTCT AAAGTAGACG AAATGATCAG CCATGCCACT GAAGAGCTGG
1261AGACCTACCG AAAGCGAGCC AAAGATCTTA AAGAATTTGA GAAAACTATT CATTTTTATC
1321AAAAGAAGAT TATTCTCCAT GAGAAAAAAG CACATGATAA TTGGTCGGCA GCTTGGACTG
1381CTGAAAGAAA CCTCAATGAT TTAAGGAAAG AAAATGCTCA CAACAGACAA AAATTAACTG
1441AAATAGAGTT TAAAATAAAA CTTTTAGAAA AAGATCCTTA TGGACTTGAT GTTCCAAATA
1501CAGCATTTGG CAGACAGCAT TCCCCATATG GTCCCTCACC ATTGGGTTGG CCTTCATCTG
1561AAACGAGAGC TTCTCTCTAT CCTCCAACTT TGTTGGAAGG TCCTCTCAGA CTCTCACCTT
1621TGCTTCCACG GGGAGGAGGA AGAGGCTCCA GAGGCCCAGG GAATCCTCCG GACCATCAGA
1681TTACCAAAGA AAGAGGAGAA TCAAGCTGTG ATAGGTTAAC TGATCCTCAC AGGGCTCCTT
1741CTGACGCTGG GCCCCTGGCA CCTCCGTGGG AACAGGACTA TAGGATGATG TTTCCTCCAC
1801CAGGACAATC ATATCCTGAT TCAGCTCTCC CTCCACAAAG GCAAGACAGA TTTTATTCTA
1861ATTGTGCTAG ACTCTCTGGA CCAGCAGAAC TCAGAAGTTT TAATATGCCT TCTTTGGATA
1921AAATGGATGG GTCAATGCCT TCAGAAATGG AATCCAGTAG AAATGATACC AAAGATAATC
1981TTGGTAATTT AAAGGTGCCT GATTCATCTC TCCCCGCTGA AAATGAAGCA ACTGGCCCTG
2041GCTTTGTTCC TCCACCTCTT GCTCCAATCA GAGGTTTATT GTTTCCGGTA GATACAAGGG
2101GCCCGTTCAT AAGAAGAGGA CCTCCTTTCC CCCCACCTCC TCCAGGAACC GTGTTTGGAG
2161CTTCTCCAGA TTATTTTTCT CCAAGGGATG TCCCAGGTCC ACCACGTGCT CCATTTGCAA
2221TGAGAAATGT CTATTTACCG AGAGGTTTTC TTCCTTACCG TCCCCCAAGA CCTGCATTTT
2281TCCCCCCAGC CCCCACATTC TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
2341attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)