Transcript: Human NR_003268.3

Homo sapiens CTAGE family member 10, pseudogene (CTAGE10P), non-coding RNA.

Source:
NCBI, updated 2018-05-25
Taxon:
Homo sapiens (human)
Gene:
CTAGE10P (220429)
Length:
2972
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_003268.3
NBCI Gene record:
CTAGE10P (220429)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_003268.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000337160 TCGGTTAGGAGTCGGCTTTAT pLKO_005 375 3UTR 100% 13.200 6.600 Y CTAGE9 n/a
2 TRCN0000005400 GCTGAAAGAAACCTCAATGAT pLKO.1 1587 3UTR 100% 5.625 2.813 Y CTAGE1 n/a
3 TRCN0000158680 GCTTTGAAGAAACTGATTCAT pLKO.1 1116 3UTR 100% 5.625 2.813 Y MIA2 n/a
4 TRCN0000158755 GAAATGAAACTCTACAGGAAA pLKO.1 1359 3UTR 100% 4.950 2.475 Y CTAGE4 n/a
5 TRCN0000148442 CCAGGACAATCATATCCTGAT pLKO.1 2007 3UTR 100% 0.405 0.203 Y CTAGE6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_003268.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10967 pDONR223 100% 75% None (many diffs) n/a
2 ccsbBroad304_10967 pLX_304 0% 75% V5 (many diffs) n/a
3 TRCN0000470328 CTTGCATGAATTTATTTTATTCTT pLX_317 13.8% 75% V5 (many diffs) n/a
4 ccsbBroadEn_13076 pDONR223 100% 74.3% None (many diffs) n/a
5 ccsbBroad304_13076 pLX_304 0% 74.3% V5 (many diffs) n/a
6 TRCN0000481377 AACTAGAGAATGGGATCGGTCGAA pLX_317 19.7% 74.3% V5 (many diffs) n/a
7 ccsbBroadEn_03960 pDONR223 100% 69.8% None (many diffs) n/a
8 ccsbBroad304_03960 pLX_304 0% 69.8% V5 (many diffs) n/a
9 TRCN0000469836 CGAATATCTAATGCTCGTTTGACG pLX_317 17.1% 69.8% V5 (many diffs) n/a
10 ccsbBroadEn_10968 pDONR223 100% 67.8% None (many diffs) n/a
11 ccsbBroad304_10968 pLX_304 0% 67.8% V5 (many diffs) n/a
12 TRCN0000475416 ATAGTTAGCGCAGAAAAGATACGG pLX_317 11.5% 67.8% V5 (many diffs) n/a
13 ccsbBroadEn_13596 pDONR223 100% 65.9% None (many diffs) n/a
14 ccsbBroad304_13596 pLX_304 0% 65.9% V5 (many diffs) n/a
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