Construct: ORF ccsbBroadEn_04314
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001047.1_s300c1, BRDN0000389164
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM172A (83989)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83989 | FAM172A | family with sequence simila... | NM_032042.6 | 100% | 100% | |
| 2 | human | 83989 | FAM172A | family with sequence simila... | XM_006714717.3 | 100% | 100% | |
| 3 | human | 83989 | FAM172A | family with sequence simila... | XM_017009952.1 | 92.6% | 92.5% | (many diffs) |
| 4 | human | 83989 | FAM172A | family with sequence simila... | XM_017009953.1 | 92.6% | 92.5% | (many diffs) |
| 5 | human | 83989 | FAM172A | family with sequence simila... | XM_011543668.3 | 91.4% | 89.7% | (many diffs) |
| 6 | human | 83989 | FAM172A | family with sequence simila... | XM_017009954.2 | 91.3% | 88.8% | (many diffs) |
| 7 | human | 83989 | FAM172A | family with sequence simila... | XM_005272103.4 | 90.2% | 87.9% | (many diffs) |
| 8 | human | 83989 | FAM172A | family with sequence simila... | XM_011543670.3 | 89.3% | 88.7% | (many diffs) |
| 9 | human | 83989 | FAM172A | family with sequence simila... | XM_011543671.3 | 89.1% | 88.7% | 1108_1109insGCACCGACCGTC;1110T>C;1113_1114ins123 |
| 10 | human | 83989 | FAM172A | family with sequence simila... | NM_001163417.1 | 88.9% | 88.9% | 0_1ins138 |
| 11 | human | 83989 | FAM172A | family with sequence simila... | XM_011543672.2 | 88.9% | 88.9% | 0_1ins138 |
| 12 | human | 83989 | FAM172A | family with sequence simila... | XM_017009955.1 | 88.9% | 88.9% | 0_1ins138 |
| 13 | human | 83989 | FAM172A | family with sequence simila... | XM_017009956.1 | 88.9% | 88.9% | 0_1ins138 |
| 14 | human | 83989 | FAM172A | family with sequence simila... | XM_005272105.4 | 84.6% | 84.6% | 375_376ins192 |
| 15 | human | 83989 | FAM172A | family with sequence simila... | XM_005272106.4 | 82.4% | 82.4% | 567_568ins219 |
| 16 | human | 83989 | FAM172A | family with sequence simila... | XM_005272108.3 | 80% | 74.7% | 0_1ins148;60_61ins101 |
| 17 | human | 83989 | FAM172A | family with sequence simila... | XM_006714718.3 | 80% | 74.7% | 0_1ins148;60_61ins101 |
| 18 | human | 83989 | FAM172A | family with sequence simila... | XM_006714719.3 | 80% | 74.7% | 0_1ins148;60_61ins101 |
| 19 | human | 83989 | FAM172A | family with sequence simila... | XM_011543673.2 | 80% | 74.7% | 0_1ins148;60_61ins101 |
| 20 | human | 83989 | FAM172A | family with sequence simila... | XM_017009957.1 | 80% | 74.7% | 0_1ins148;60_61ins101 |
| 21 | human | 83989 | FAM172A | family with sequence simila... | XM_017009958.1 | 80% | 74.7% | 0_1ins148;60_61ins101 |
| 22 | human | 83989 | FAM172A | family with sequence simila... | XM_005272109.5 | 75% | 74.1% | (many diffs) |
| 23 | human | 83989 | FAM172A | family with sequence simila... | XM_011543674.3 | 73.8% | 72.5% | (many diffs) |
| 24 | human | 83989 | FAM172A | family with sequence simila... | NM_001163418.1 | 73.5% | 73.5% | 0_1ins138;237_238ins192 |
| 25 | human | 83989 | FAM172A | family with sequence simila... | XM_005272110.3 | 71.3% | 71.3% | 0_1ins138;429_430ins219 |
| 26 | human | 83989 | FAM172A | family with sequence simila... | XM_005272111.5 | 65.2% | 63.1% | (many diffs) |
| 27 | human | 83989 | FAM172A | family with sequence simila... | XM_017009960.1 | 64.6% | 59.5% | 0_1ins148;60_61ins101;126_127ins192 |
| 28 | human | 83989 | FAM172A | family with sequence simila... | XM_017009959.2 | 64.1% | 63% | (many diffs) |
| 29 | human | 83989 | FAM172A | family with sequence simila... | XM_017009961.2 | 59.8% | 58.7% | (many diffs) |
| 30 | human | 83989 | FAM172A | family with sequence simila... | XM_017009962.1 | 54.2% | 52.1% | (many diffs) |
| 31 | human | 83989 | FAM172A | family with sequence simila... | NR_028080.1 | 20.2% | (many diffs) | |
| 32 | human | 83989 | FAM172A | family with sequence simila... | XR_001742301.2 | 16.9% | 1_174del;1198_1284del;1510_7369del | |
| 33 | human | 83989 | FAM172A | family with sequence simila... | XR_001742304.1 | 15% | (many diffs) | |
| 34 | mouse | 68675 | Fam172a | family with sequence simila... | NM_138312.1 | 89.7% | 93% | (many diffs) |
| 35 | mouse | 68675 | Fam172a | family with sequence simila... | XM_006517350.3 | 82.6% | 83.3% | (many diffs) |
| 36 | mouse | 68675 | Fam172a | family with sequence simila... | NM_001163419.1 | 79.8% | 83.6% | (many diffs) |
| 37 | mouse | 68675 | Fam172a | family with sequence simila... | XM_006517352.2 | 75.7% | 73.3% | (many diffs) |
| 38 | mouse | 68675 | Fam172a | family with sequence simila... | XM_006517353.3 | 74.4% | 74.4% | (many diffs) |
| 39 | mouse | 68675 | Fam172a | family with sequence simila... | XR_001780804.1 | 70.7% | (many diffs) | |
| 40 | mouse | 68675 | Fam172a | family with sequence simila... | XM_017315581.1 | 68.6% | 70.5% | (many diffs) |
| 41 | mouse | 68675 | Fam172a | family with sequence simila... | NM_001163420.1 | 65% | 68.8% | (many diffs) |
| 42 | mouse | 68675 | Fam172a | family with sequence simila... | XM_006517355.3 | 64.3% | 64.9% | (many diffs) |
| 43 | mouse | 68675 | Fam172a | family with sequence simila... | XM_017315582.1 | 38.8% | 36.3% | (many diffs) |
| 44 | mouse | 68675 | Fam172a | family with sequence simila... | NR_028109.1 | 27.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 65
- ORF end:
- 1313
- ORF length:
- 1248
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TGGCATGTCT ATTTCCTTGA GCTCTTTAAT TTTGTTGCCA ATTTGGATAA ACATGGCACA 121 AATCCAGCAG GGAGGTCCAG ATGAAAAAGA AAAGACTACC GCACTGAAAG ATTTATTATC 181 TAGGATAGAT TTGGATGAAC TAATGAAAAA AGATGAACCG CCTCTTGATT TTCCTGATAC 241 CCTGGAAGGA TTTGAATATG CTTTTAATGA AAAGGGACAG TTAAGACACA TAAAAACTGG 301 GGAACCATTT GTTTTTAACT ACCGGGAAGA TTTACACAGA TGGAACCAGA AAAGATACGA 361 GGCTCTAGGA GAGATCATCA CGAAGTATGT ATATGAGCTC CTGGAAAAGG ATTGTAATTT 421 GAAAAAAGTA TCTATTCCAG TAGATGCCAC TGAGAGTGAA CCAAAGAGTT TTATCTTTAT 481 GAGTGAGGAT GCTTTGACAA ATCCACAGAA ACTGATGGTT TTAATTCATG GTAGTGGTGT 541 TGTCAGGGCA GGGCAGTGGG CTAGAAGACT TATTATAAAT GAAGATCTGG ACAGTGGCAC 601 ACAGATACCG TTTATTAAAA GAGCTGTGGC TGAAGGATAT GGAGTAATAG TACTAAATCC 661 CAATGAAAAC TATATTGAAG TAGAAAAGCC GAAGATACAC GTACAGTCAT CATCTGATAG 721 TTCAGATGAA CCAGCAGAAA AACGGGAAAG AAAAGATAAA GTTTCTAAAG AAACAAAGAA 781 GCGACGTGAT TTCTATGAGA AGTATCGTAA CCCCCAAAGA GAAAAAGAAA TGATGCAATT 841 GTATATCAGA GAAAATGGTT CTCCTGAAGA ACATGCAATC TATGTTTGGG ATCATTTCAT 901 AGCTCAGGCT GCTGCTGAGA ATGTGTTTTT CGTTGCTCAC AGCTATGGAG GACTTGCTTT 961 TGTTGAACTG ATGATTCAAC GAGAAGCCGA TGTAAAAAAT AAGGTAACTG CTGTGGCATT 1021 GACAGACTCT GTTCACAATG TGTGGCATCA AGAAGCTGGC AAAACGATTC GAGAATGGAT 1081 GAGAGAGAAC TGTTGTAATT GGGTCTCTAG CTCAGAACCA TTAGACACAT CAGTGGAGTC 1141 CATGCTACCT GATTGCCCCC GGGTCTCAGC AGGCACCGAC CGTCACGAGC TAACTTCCTG 1201 GAAGAGCTTT CCGTCTATTT TCAAATTCTT TACCGAAGCC TCAGAGGCCA AGACCAGCTC 1261 CCTGAAGCCG GCTGTGACGC GCCGCTCCCA CCGCATCAAG CACGAAGAGC TGTACCCAAC 1321 TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt gcaacgaac