Construct: ORF ccsbBroadEn_04659
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012430.1_s300c1, BRDN0000394814
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BTBD9 (114781)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114781 | BTBD9 | BTB domain containing 9 | NM_001172418.1 | 100% | 100% | |
| 2 | human | 114781 | BTBD9 | BTB domain containing 9 | NM_152733.2 | 93.4% | 93.4% | 0_1ins27;945_946ins87 |
| 3 | human | 114781 | BTBD9 | BTB domain containing 9 | NM_001099272.2 | 86.1% | 85.9% | (many diffs) |
| 4 | human | 114781 | BTBD9 | BTB domain containing 9 | NM_052893.2 | 86.1% | 85.9% | (many diffs) |
| 5 | human | 114781 | BTBD9 | BTB domain containing 9 | XM_011514279.3 | 86.1% | 85.9% | (many diffs) |
| 6 | human | 114781 | BTBD9 | BTB domain containing 9 | XM_011514280.3 | 52.8% | 51% | (many diffs) |
| 7 | human | 114781 | BTBD9 | BTB domain containing 9 | XM_011514281.3 | 51.1% | 50.7% | (many diffs) |
| 8 | human | 114781 | BTBD9 | BTB domain containing 9 | XM_011514282.3 | 50.9% | 50.3% | (many diffs) |
| 9 | human | 114781 | BTBD9 | BTB domain containing 9 | XM_017010227.2 | 50.9% | 50.3% | (many diffs) |
| 10 | mouse | 224671 | Btbd9 | BTB (POZ) domain containing 9 | XM_006524094.3 | 77.4% | 82.3% | (many diffs) |
| 11 | mouse | 224671 | Btbd9 | BTB (POZ) domain containing 9 | XM_011246395.2 | 77.4% | 82.3% | (many diffs) |
| 12 | mouse | 224671 | Btbd9 | BTB (POZ) domain containing 9 | NM_027060.1 | 75.8% | 82% | (many diffs) |
| 13 | mouse | 224671 | Btbd9 | BTB (POZ) domain containing 9 | NM_172618.2 | 75.8% | 82% | (many diffs) |
| 14 | mouse | 224671 | Btbd9 | BTB (POZ) domain containing 9 | XM_006524095.3 | 45.6% | 49.7% | (many diffs) |
| 15 | mouse | 224671 | Btbd9 | BTB (POZ) domain containing 9 | XM_006524096.3 | 44.4% | 49.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1815
- ORF length:
- 1746
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTGCAGAGCA TTATTATATG GTGGAATGCG AGAGTCTCAG CCTGAAGCAG 121 AAATTCCTCT CCAAGACACC ACTGCAGAAG CATTCACAAT GCTACTCAAA TATATCTACA 181 CTGGGCGGGC AACGCTGACA GATGAGAAGG AGGAGGTGCT GCTGGACTTT TTGAGCCTGG 241 CTCATAAATA TGGATTTCCA GAGCTAGAGG ATTCTACCTC TGAGTATCTC TGCACCATAC 301 TTAACATTCA GAATGTCTGC ATGACTTTTG ATGTTGCCAG TCTCTACTCA CTTCCCAAGT 361 TAACTTGTAT GTGCTGCATG TTTATGGATA GGAATGCTCA GGAAGTCCTC TCAAGTGAAG 421 GTTTCCTCTC CCTTTCTAAG ACAGCACTTT TAAACATCGT GTTAAGAGAC TCATTTGCAG 481 CTCCCGAAAA AGATATTTTC CTAGCCTTAT TAAACTGGTG TAAGCACAAT TCAAAGGAGA 541 ATCATGCTGA AATCATGCAG GCTGTGCGTT TACCTCTCAT GAGCCTCACA GAGCTTCTGA 601 ATGTTGTGAG GCCTTCAGGA CTGCTGTCTC CTGATGCCAT CCTGGATGCC ATTAAAGTGC 661 GATCTGAGAG CCGGGATATG GACCTCAATT ATAGAGGCAT GCTCATACCA GAAGAAAACA 721 TTGCAACTAT GAAGTATGGA GCCCAAGTTG TAAAGGGGGA GCTGAAATCA GCCTTATTAG 781 ATGGTGATAC TCAAAATTAT GATTTGGATC ATGGATTTTC AAGGCACCCA ATTGATGATG 841 ACTGCCGTTC CGGCATCGAG ATTAAGCTAG GTCAGCCATC CATTATCAAT CACATACGGA 901 TACTCTTGTG GGACCGAGAT AGCCGGTCTT ACTCATACTT CATTGAAGTG TCAATGGATG 961 AACTTGATTG GGTCAGAGTG ATAGATCATT CACAATATCT GTGTCGTTCT TGGCAGAAAT 1021 TATATTTTCC AGCCCGTGTC TGCAGTGGAG ATGGAGTCTC ACTATGGTGC CCACTCTGGT 1081 CTCGAACTCC TGAGCTCAAG CAATCCTCCC TCCTTGGCCT TCCAAAGTGC AGGTATATTC 1141 GAATTGTTGG GACTCACAAC ACAGTGAACA AGATTTTTCA CATTGTGGCT TTTGAATGTA 1201 TGTTTACAAA CAAAACCTTC ACTCTTGAGA AGGGGCTGAT AGTTCCCATG GAGAATGTTG 1261 CAACAATTGC TGATTGTGCC AGTGTGATTG AAGGAGTCAG TCGGAGCCGA AATGCCTTGC 1321 TGAATGGGGA CACTAAGAAT TATGACTGGG ATTCTGGCTA CACATGTCAC CAGCTAGGAA 1381 GTGGTGCGAT TGTGGTTCAG TTGGCACAAC CGTACATGAT TGGGTCAATA CGGTTACTAC 1441 TTTGGGATTG TGATGATCGA AGCTATAGCT ACTACGTTGA GGTTTCTACC AACCAGCAAC 1501 AGTGGACCAT GGTTGCTGAC AGAACTAAAG TCTCCTGCAA GTCCTGGCAG TCAGTAACTT 1561 TTGAAAGGCA GCCTGCCTCC TTCATCCGTA TCGTTGGGAC ACACAACACA GCAAATGAGG 1621 TGTTCCACTG TGTCCACTTT GAGTGTCCAG AGCAGCAGAG CAGCCAGAAG GAGGAAAATA 1681 GTGAGGAATC GGGGACAGGG GACACCAGCC TGGCCGGTCA GCAGCTCGAC TCCCATGCGC 1741 TGCGGGCGCC TAGTGGCAGC TCACTACCCT CCAGCCCAGG CTCCAACTCA CGCTCCCCCA 1801 ACCGGCAGCA CCAATTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1861 tatcaatttg ttgcaacgaa c