Construct: ORF ccsbBroadEn_04659

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012430.1_s300c1, BRDN0000394814
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BTBD9 (114781)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 114781 BTBD9 BTB domain containing 9 NM_001172418.1 100% 100%
2 human 114781 BTBD9 BTB domain containing 9 NM_152733.2 93.4% 93.4% 0_1ins27;945_946ins87
3 human 114781 BTBD9 BTB domain containing 9 NM_001099272.2 86.1% 85.9% (many diffs)
4 human 114781 BTBD9 BTB domain containing 9 NM_052893.2 86.1% 85.9% (many diffs)
5 human 114781 BTBD9 BTB domain containing 9 XM_011514279.3 86.1% 85.9% (many diffs)
6 human 114781 BTBD9 BTB domain containing 9 XM_011514280.3 52.8% 51% (many diffs)
7 human 114781 BTBD9 BTB domain containing 9 XM_011514281.3 51.1% 50.7% (many diffs)
8 human 114781 BTBD9 BTB domain containing 9 XM_011514282.3 50.9% 50.3% (many diffs)
9 human 114781 BTBD9 BTB domain containing 9 XM_017010227.2 50.9% 50.3% (many diffs)
10 mouse 224671 Btbd9 BTB (POZ) domain containing 9 XM_006524094.3 77.4% 82.3% (many diffs)
11 mouse 224671 Btbd9 BTB (POZ) domain containing 9 XM_011246395.2 77.4% 82.3% (many diffs)
12 mouse 224671 Btbd9 BTB (POZ) domain containing 9 NM_027060.1 75.8% 82% (many diffs)
13 mouse 224671 Btbd9 BTB (POZ) domain containing 9 NM_172618.2 75.8% 82% (many diffs)
14 mouse 224671 Btbd9 BTB (POZ) domain containing 9 XM_006524095.3 45.6% 49.7% (many diffs)
15 mouse 224671 Btbd9 BTB (POZ) domain containing 9 XM_006524096.3 44.4% 49.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1815
ORF length:
1746
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTGCAGAGCA TTATTATATG GTGGAATGCG AGAGTCTCAG CCTGAAGCAG
121AAATTCCTCT CCAAGACACC ACTGCAGAAG CATTCACAAT GCTACTCAAA TATATCTACA
181CTGGGCGGGC AACGCTGACA GATGAGAAGG AGGAGGTGCT GCTGGACTTT TTGAGCCTGG
241CTCATAAATA TGGATTTCCA GAGCTAGAGG ATTCTACCTC TGAGTATCTC TGCACCATAC
301TTAACATTCA GAATGTCTGC ATGACTTTTG ATGTTGCCAG TCTCTACTCA CTTCCCAAGT
361TAACTTGTAT GTGCTGCATG TTTATGGATA GGAATGCTCA GGAAGTCCTC TCAAGTGAAG
421GTTTCCTCTC CCTTTCTAAG ACAGCACTTT TAAACATCGT GTTAAGAGAC TCATTTGCAG
481CTCCCGAAAA AGATATTTTC CTAGCCTTAT TAAACTGGTG TAAGCACAAT TCAAAGGAGA
541ATCATGCTGA AATCATGCAG GCTGTGCGTT TACCTCTCAT GAGCCTCACA GAGCTTCTGA
601ATGTTGTGAG GCCTTCAGGA CTGCTGTCTC CTGATGCCAT CCTGGATGCC ATTAAAGTGC
661GATCTGAGAG CCGGGATATG GACCTCAATT ATAGAGGCAT GCTCATACCA GAAGAAAACA
721TTGCAACTAT GAAGTATGGA GCCCAAGTTG TAAAGGGGGA GCTGAAATCA GCCTTATTAG
781ATGGTGATAC TCAAAATTAT GATTTGGATC ATGGATTTTC AAGGCACCCA ATTGATGATG
841ACTGCCGTTC CGGCATCGAG ATTAAGCTAG GTCAGCCATC CATTATCAAT CACATACGGA
901TACTCTTGTG GGACCGAGAT AGCCGGTCTT ACTCATACTT CATTGAAGTG TCAATGGATG
961AACTTGATTG GGTCAGAGTG ATAGATCATT CACAATATCT GTGTCGTTCT TGGCAGAAAT
1021TATATTTTCC AGCCCGTGTC TGCAGTGGAG ATGGAGTCTC ACTATGGTGC CCACTCTGGT
1081CTCGAACTCC TGAGCTCAAG CAATCCTCCC TCCTTGGCCT TCCAAAGTGC AGGTATATTC
1141GAATTGTTGG GACTCACAAC ACAGTGAACA AGATTTTTCA CATTGTGGCT TTTGAATGTA
1201TGTTTACAAA CAAAACCTTC ACTCTTGAGA AGGGGCTGAT AGTTCCCATG GAGAATGTTG
1261CAACAATTGC TGATTGTGCC AGTGTGATTG AAGGAGTCAG TCGGAGCCGA AATGCCTTGC
1321TGAATGGGGA CACTAAGAAT TATGACTGGG ATTCTGGCTA CACATGTCAC CAGCTAGGAA
1381GTGGTGCGAT TGTGGTTCAG TTGGCACAAC CGTACATGAT TGGGTCAATA CGGTTACTAC
1441TTTGGGATTG TGATGATCGA AGCTATAGCT ACTACGTTGA GGTTTCTACC AACCAGCAAC
1501AGTGGACCAT GGTTGCTGAC AGAACTAAAG TCTCCTGCAA GTCCTGGCAG TCAGTAACTT
1561TTGAAAGGCA GCCTGCCTCC TTCATCCGTA TCGTTGGGAC ACACAACACA GCAAATGAGG
1621TGTTCCACTG TGTCCACTTT GAGTGTCCAG AGCAGCAGAG CAGCCAGAAG GAGGAAAATA
1681GTGAGGAATC GGGGACAGGG GACACCAGCC TGGCCGGTCA GCAGCTCGAC TCCCATGCGC
1741TGCGGGCGCC TAGTGGCAGC TCACTACCCT CCAGCCCAGG CTCCAACTCA CGCTCCCCCA
1801ACCGGCAGCA CCAATTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1861tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)