Construct: ORF ccsbBroadEn_05284

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009181.1_s300c1, BRDN0000393637
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AFG1L (246269)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 246269 AFG1L AFG1 like ATPase NM_145315.5 99.9% 99.7% 1443delG
2 human 246269 AFG1L AFG1 like ATPase XM_011535657.2 92.8% 92.7% 415_416ins102;1341delG
3 human 246269 AFG1L AFG1 like ATPase XM_005266885.3 92% 91% (many diffs)
4 human 246269 AFG1L AFG1 like ATPase XM_017010647.2 92% 91% (many diffs)
5 human 246269 AFG1L AFG1 like ATPase NM_001323005.2 90.1% 90% 1062_1063ins141;1302delG
6 human 246269 AFG1L AFG1 like ATPase XM_017010648.1 70.2% 70% 0_1ins429;1014delG
7 human 246269 AFG1L AFG1 like ATPase XM_017010649.1 70.2% 70% 0_1ins429;1014delG
8 human 246269 AFG1L AFG1 like ATPase XM_024446391.1 60.8% 60.7% 0_1ins564;879delG
9 human 246269 AFG1L AFG1 like ATPase XM_011535659.3 57.5% 55.3% (many diffs)
10 human 246269 AFG1L AFG1 like ATPase XM_011535660.2 57.2% 56.7% (many diffs)
11 human 246269 AFG1L AFG1 like ATPase XM_011535661.2 52.6% 52.1% (many diffs)
12 human 246269 AFG1L AFG1 like ATPase NR_136553.2 19.9% (many diffs)
13 mouse 215951 Afg1l AFG1 like ATPase NM_145743.2 87.8% 86.6% (many diffs)
14 mouse 215951 Afg1l AFG1 like ATPase XM_017313883.1 83.5% 80.3% (many diffs)
15 mouse 215951 Afg1l AFG1 like ATPase XM_006512697.3 62.7% 63.8% (many diffs)
16 mouse 215951 Afg1l AFG1 like ATPase XM_006512698.1 62.7% 63.8% (many diffs)
17 mouse 215951 Afg1l AFG1 like ATPase XM_006512700.3 48% 48.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1509
ORF length:
1443
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGCCTCCTGG TCGCTCTTGG TTACCCTGCG CCCCTTAGCA CAGAGCCCGC
121TGAGAGGGAG ATGTGTTGGG TGCGGGGCCT GGGCCGCCGC TCTCGCTCCT CTGGCCACCG
181CCCCTGGGAA GCCCTTTTGG AAAGCCTATA CGGTTCAGAC ATCCGAGAGC ATGACCCCAA
241CTGCCACTTC AGAGACTTAT TTGAAAGCTT TGGCCGTTTG CCATGGACCT CTGGACCACT
301ATGATTTTCT GATCAAAGCT CATGAGCTAA AGGATGATGA ACATCAAAGA AGAGTCATAC
361AGTGTTTGCA GAAATTACAC GAGGACCTTA AAGGATACAA TATAGAGGCA GAAGGCCTTT
421TTTCAAAGCT TTTTTCAAGG AGCAAACCTC CAAGGGGCCT GTATGTTTAT GGAGATGTTG
481GTACAGGAAA AACAATGGTG ATGGACATGT TTTATGCTTA TGTGGAAATG AAGAGGAAAA
541AACGGGTTCA TTTTCATGGT TTCATGCTAG ATGTGCACAA AAGAATACAT CGCCTTAAAC
601AGAGTTTGCC AAAAAGGAAA CCAGGATTCA TGGCTAAATC ATATGACCCA ATAGCTCCCA
661TAGCCGAAGA AATCAGCGAA GAAGCATGTC TCCTATGTTT TGATGAATTT CAGGTCACTG
721ACATTGCTGA TGCCATGATT CTGAAACAGC TTTTTGAAAA TCTGTTCAAA AACGGGGTCG
781TCGTTGTGGC AACATCCAAC AGGCCACCGG AAGATCTCTA TAAAAATGGA CTCCAAAGAG
841CTAACTTTGT ACCATTCATA GCAGTCTTGA AGGAATATTG TAATACAGTC CAGCTAGATT
901CTGGGATAGA TTACCGGAAA AGGGAACTTC CTGCTGCAGG AAAACTCTAC TACCTCACAA
961GTGAAGCTGA TGTGGAGGCT GTCATGGATA AGTTGTTTGA TGAGCTGGCT CAGAAACAAA
1021ATGATTTAAC TAGACCAAGG ATTCTAAAAG TGCAAGGCAG AGAGCTGCGC CTGAATAAAG
1081CCTGTGGAAC CGTTGCCGAC TGCACATTTG AAGAGCTGTG TGAGAGACCA CTTGGAGCCA
1141GTGACTATTT GGAACTATCA AAGAATTTTG ATACAATATT TTTACGAAAC ATTCCGCAAT
1201TTACTCTGGC AAACAGGACT CAAGGTCGAA GATTCATAAC TCTCATCGAT AACTTTTATG
1261ATCTCAAGGT GCGTATAATT TGCTCTGCGT CGACTCCTAT ATCAAGCTTA TTTTTGCATC
1321AACATCATGA CAGTGAGTTG GAGCAAAGCA GAATACTGAT GGATGATTTG GGGCTGAGCC
1381AGGATTCAGC AGAAGGACTC TCCATGTTTA CCGGAGAAGA GGAAATCTTT GCATTTCAGC
1441GCACAATTTC CCGACTCACG GAAATGCAGA CTGAACAGTA CTGGAATGAA GGAGACAGAA
1501CCAAGAATAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt gcttatcaat
1561ttgttgcaac gaac

Download FASTA (ORF) (Full)

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