Construct: ORF ccsbBroadEn_06154

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001683.1_s300c1, BRDN0000389117
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ELAVL4 (1996)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001144774.3 99.6% 99.4% (many diffs)
2 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001324212.2 99.3% 98.9% (many diffs)
3 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001324214.2 99.3% 98.9% (many diffs)
4 human 1996 ELAVL4 ELAV like RNA binding prote... XM_024453825.1 99.3% 98.6% (many diffs)
5 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001144776.3 99.2% 98.9% (many diffs)
6 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001294348.2 98.2% 97.5% (many diffs)
7 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001144777.3 97.7% 97.8% (many diffs)
8 human 1996 ELAVL4 ELAV like RNA binding prote... XM_017000539.1 97.7% 97.5% (many diffs)
9 human 1996 ELAVL4 ELAV like RNA binding prote... XM_024453827.1 97.7% 97.5% (many diffs)
10 human 1996 ELAVL4 ELAV like RNA binding prote... XM_024453822.1 96.2% 95.5% (many diffs)
11 human 1996 ELAVL4 ELAV like RNA binding prote... XM_017000538.1 96.1% 95.2% (many diffs)
12 human 1996 ELAVL4 ELAV like RNA binding prote... XM_024453829.1 96% 95.9% (many diffs)
13 human 1996 ELAVL4 ELAV like RNA binding prote... NM_021952.5 95.9% 95.7% (many diffs)
14 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001324209.2 95.8% 95.3% (many diffs)
15 human 1996 ELAVL4 ELAV like RNA binding prote... XM_011540894.2 95.7% 95.2% (many diffs)
16 human 1996 ELAVL4 ELAV like RNA binding prote... XM_011540895.3 95.7% 95.2% (many diffs)
17 human 1996 ELAVL4 ELAV like RNA binding prote... XM_011540893.2 95.6% 95.2% (many diffs)
18 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001324215.2 94.6% 94% (many diffs)
19 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001324213.2 94.6% 94% (many diffs)
20 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001324208.2 94.1% 94.2% (many diffs)
21 human 1996 ELAVL4 ELAV like RNA binding prote... XM_006710411.3 92.7% 91.8% (many diffs)
22 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001144775.3 90.3% 90% (many diffs)
23 human 1996 ELAVL4 ELAV like RNA binding prote... XM_011540889.3 87.3% 87% (many diffs)
24 human 1996 ELAVL4 ELAV like RNA binding prote... XM_011540890.2 87.1% 86.8% (many diffs)
25 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001324216.1 33.9% 32.5% (many diffs)
26 human 1996 ELAVL4 ELAV like RNA binding prote... NM_001324217.2 33.3% 31.5% (many diffs)
27 human 1996 ELAVL4 ELAV like RNA binding prote... XM_017000542.1 32.9% 31.4% (many diffs)
28 human 1996 ELAVL4 ELAV like RNA binding prote... XM_017000541.1 32.6% 30.6% (many diffs)
29 human 1996 ELAVL4 ELAV like RNA binding prote... XM_017000540.1 30.6% 29.1% (many diffs)
30 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... NM_001347178.1 94.1% 99.1% (many diffs)
31 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... XM_017319993.1 93.6% 98.6% (many diffs)
32 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... NM_001163399.1 92.8% 97.3% (many diffs)
33 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... NM_001038698.1 90.7% 95.5% (many diffs)
34 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... XM_006502800.2 90.3% 95% (many diffs)
35 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... XM_006502801.2 90.1% 95% (many diffs)
36 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... XM_006502799.3 89.6% 94.2% (many diffs)
37 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... NM_010488.4 89.4% 93.7% (many diffs)
38 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... XM_006502798.3 89% 93.9% (many diffs)
39 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... XM_006502802.2 88.8% 93.6% (many diffs)
40 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... NM_001163397.1 88.8% 94% (many diffs)
41 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... XM_006502796.3 88.6% 93% (many diffs)
42 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... XM_006502795.2 87.6% 91.6% (many diffs)
43 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... XM_006502794.3 86.6% 91.1% (many diffs)
44 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... XM_006502793.3 86.5% 90.9% (many diffs)
45 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... XM_006502803.3 86.2% 90.8% (many diffs)
46 mouse 15572 Elavl4 ELAV (embryonic lethal, abn... XM_006502797.3 86.2% 90.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1164
ORF length:
1098
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT TATGATAATT AGCACCATGG AGCCTCAGGT GTCAAATGGT CCGACATCCA
121ATACAAGCAA TGGACCCTCC AGCAACAACA GAAACTGTCC TTCTCCCATG CAAACAGGGG
181CAACCACAGA TGACAGCAAA ACCAACCTCA TCGTCAACTA TTTACCCCAG AATATGACCC
241AAGAAGAATT CAGGAGTCTC TTCGGGAGCA TTGGTGAAAT AGAATCCTGC AAACTTGTGA
301GAGACAAAAT TACAGGACAG AGTTTAGGGT ATGGATTTGT TAACTATATT GATCCAAAGG
361ATGCAGAGAA AGCCATCAAC ACTTTAAATG GACTCAGACT CCAGACCAAA ACCATAAAGG
421TCTCATATGC CCGTCCGAGC TCAGCCTCAA TCAGGGATGC TAACCTCTAT GTTAGCGGCC
481TTCCCAAAAC CATGACCCAG AAGGAACTGG AGCAACTTTT CTCGCAATAC GGCCGTATCA
541TCACCTCACG AATCCTGGTT GGTCAAGTCA CAGGAGTGTC CAGAGGGGTG GGATTCATCC
601GCTTTGATAA GAGGATTGAG GCAGAAGAAG CCATCAAAGG GCTGAATGGC CAGAAGCCCA
661GCGGTGCTAC GGAACCGATT ACTGTGAAGT TTGCCAACAA CCCCAGCCAG AAGTCCAGCC
721AGGCCCTGCT CTCCCAGCTC TACCAGTCCC CTAACCGGCG CTACCCAGGT CCACTTCACC
781ACCAGGCTCA GAGGTTCAGG CTGGACAATT TGCTTAATAT GGCCTATGGC GTAAAGAGGT
841TCTCCCCAAT TACCATTGAT GGAATGACAA GCCTTGTGGG AATGAACATC CCTGGTCACA
901CAGGAACTGG GTGGTGCATC TTTGTCTACA ACCTGTCCCC CGATTCCGAT GAGAGTGTCC
961TCTGGCAGCT CTTTGGCCCC TTTGGAGCAG TGAACAACGT AAAGGTGATT CGTGACTTCA
1021ACACCAACAA GTGCAAGGGA TTCGGCTTTG TCACCATGAC CAACTATGAT GAGGCGGCCA
1081TGGCCATCAC CAGCCTCAAC GGGTACCGCC TGGGAGACAG AGTGTTGCAA GTTTCCTTTA
1141AAACCAACAA AGCCCACAAG TCCTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1201agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)