Construct: ORF ccsbBroadEn_07828

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001214.1_s300c1, BRDN0000457013
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GOLGA8A (23015)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 440270 GOLGA8B golgin A8 family member B NM_001023567.5 99.7% 99.1% (many diffs)
2 human 23015 GOLGA8A golgin A8 family member A NM_181077.4 99.6% 99% (many diffs)
3 human 23015 GOLGA8A golgin A8 family member A NM_001368071.2 99.5% 98.8% (many diffs)
4 human 23015 GOLGA8A golgin A8 family member A NM_001368072.1 99.5% 98.8% (many diffs)
5 human 283768 GOLGA8G golgin A8 family member G NM_001350919.2 80.1% 69.8% (many diffs)
6 human 100132565 GOLGA8F golgin A8 family member F NM_001350920.1 80.1% 69.8% (many diffs)
7 human 100132565 GOLGA8F golgin A8 family member F XM_024449809.1 77.9% 67.6% (many diffs)
8 human 283768 GOLGA8G golgin A8 family member G XM_024449905.1 77.9% 67.6% (many diffs)
9 human 100132565 GOLGA8F golgin A8 family member F XM_024449808.1 77.8% 67.5% (many diffs)
10 human 283768 GOLGA8G golgin A8 family member G XM_024449904.1 77.8% 67.5% (many diffs)
11 human 653720 GOLGA8M golgin A8 family member M NM_001282468.1 77.6% 65% (many diffs)
12 human 23015 GOLGA8A golgin A8 family member A XM_017022020.2 75.7% 75.1% (many diffs)
13 human 100132565 GOLGA8F golgin A8 family member F XR_002957623.1 64% (many diffs)
14 human 283768 GOLGA8G golgin A8 family member G XR_002957634.1 64% (many diffs)
15 human 653720 GOLGA8M golgin A8 family member M XM_011521951.3 59.5% 50.6% (many diffs)
16 human 653720 GOLGA8M golgin A8 family member M XM_011521954.3 59.5% 50.6% (many diffs)
17 human 653720 GOLGA8M golgin A8 family member M XM_024450037.1 59.5% 50.6% (many diffs)
18 human 283768 GOLGA8G golgin A8 family member G NM_001368078.1 55.4% 49.2% (many diffs)
19 human 283768 GOLGA8G golgin A8 family member G NM_001368080.1 55.4% 49% (many diffs)
20 human 100132565 GOLGA8F golgin A8 family member F XM_024449812.1 55.4% 49% (many diffs)
21 human 100132565 GOLGA8F golgin A8 family member F XM_024449813.1 55.4% 49% (many diffs)
22 human 100132565 GOLGA8F golgin A8 family member F XM_024449810.1 53.9% 47.3% (many diffs)
23 human 100132565 GOLGA8F golgin A8 family member F XM_024449811.1 53.9% 47.3% (many diffs)
24 human 283768 GOLGA8G golgin A8 family member G XM_024449906.1 53.9% 47.3% (many diffs)
25 human 283768 GOLGA8G golgin A8 family member G XM_024449907.1 53.9% 47.3% (many diffs)
26 human 653061 GOLGA8S golgin A8 family member S NM_001355465.1 51.8% 45.1% (many diffs)
27 human 653061 GOLGA8S golgin A8 family member S XM_024450030.1 51.8% 45.1% (many diffs)
28 human 100132565 GOLGA8F golgin A8 family member F NR_033351.1 34.7% (many diffs)
29 human 729786 GOLGA8CP golgin A8 family member C, ... NR_027411.2 29.7% (many diffs)
30 human 390535 GOLGA8EP golgin A8 family member E, ... NR_033350.1 29.7% (many diffs)
31 human 100132979 GOLGA8DP golgin A8 family member D, ... NR_027407.1 29.3% (many diffs)
32 human 440270 GOLGA8B golgin A8 family member B NR_027410.1 27.6% (many diffs)
33 human 23015 GOLGA8A golgin A8 family member A NR_027409.2 26.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1878
ORF length:
1809
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCAGAAGAA ACTGGACAGA GTAAATTAGC TGCAGCCAAG AAAAAGTTCA
121AAGAATATTG GCAGAGAAAC CGCCCTGGTG TTCCAGCAGC AGCGAAGAGG AACACGAAAG
181CAAATGGCAG TAGCCCTGAG ACGGCCGCTT CTGGTGGTTG CCACTCATCT GAGGCTTCCT
241CCTCCGCCTC CTCCTCTCTG CATGCGCGTC AGAGCCCGTG CCAAGAACAA GCAGCAGTCC
301TGAACTCGAG GTCCATAAAA ATCAGTCGAC TGAATGACAC CATCAAATCT TTGAAACAAC
361AGAAGAAACA AGTGGAACAT CAGCTGGAAG AAGAAAAGAA AGCAAACAAT GAGAAACAGA
421AAGCTGAAAG GGAGCTAGAG GGTCAAATCC AGAGATTGAA CACAGAGAAA AAGAAACTAA
481ATACGGACCT GTATCACATG AAACATTCTC TCAGATACTT TGAAGAAGAG TCCAAGGATC
541TGGCCGGCCG CCTGCAACGT TCATCGCAGC GTATAGGAGA GTTAGAGTGG TCTCTCTGTG
601CTGTCGCCGC CACACAGAAG AAGAAGCCGG ATGGGTTCTC GAGCCGCAGT AAAGCACTTC
661TCAAGCGGCA GTTAGAGCAG TCCATACGGG AGCAGATACT GCTGAAAGGA CACGTGACAC
721AGTTGAAGGA GTCGCTTAAA GAAGTCCAGC TGGAGAGAGA TCAATATGCT GAACAAATAA
781AAGGAGAGAG GGCCCAGTGG CAGCAGAGGA TGAGGAAAAT GTCGCAGGAG GTTTGCACAT
841TGAAGGAGGA GAAGAAGCAT GATACGCATC GGGTAGAGGA GCTGGAGAGG AGCTTGTCCA
901GACTCAAAAA CCAGATGGCT GAGCCACTGC CCCCGGATGC CCCAGCAGTG TCCTCTGAGG
961TGGAGCTGCA AGACCTGAGG AAGGAGCTGG AGAGAGTGGC AGGAGAGCTC CAGGCTCAGG
1021TGGAAAACAA TCAGTGCATC AGTCTCCTGA ACCGTGGGCA AAAGGAGAGG CTTCGCGAGC
1081AGGAGGAGAG GCTTCAGGAG CAGCAGGAGA GGCTTCGGGA ACAGGAGAAG AGGCTTCAGC
1141AGCTGGCCGA GCCACAGAGC GACTTGGAGG AGCTGAAGCA CGAGAACAAG AGCGCACTGC
1201AGTTGGAGCA GCAAGTAAAG GAGCTGCAGG AGAAGCTGGG CCAGGTGACG GAGACGCTCA
1261CCTCGGCCGA GAAGGAGCCA GAGGCAGCAG TCCCAGCCTC AGGGACTGGG GGCGAGTCTA
1321GCGGCCTTAT GGACCTCCTG GAGGAGAAGG TGGACCTGAG GGAGCATGTG GAGAAACTGG
1381AACTTGGATT CATCCAGTAC CGGAGAGAGA GATGCCATCA GAAAGTACAT CGCCTTCTAA
1441CAGAGCCAGG GGACAGTGCC AAAGATGCGT CACCGGGAGG AGGCCATCAT CAGGCTGGCC
1501CAGGACGAGG AGGAGAGGAA GGTGAAGCTG TTGGAGCTGC AGGAGATGGT GTTGCGGCTT
1561GTGGCAGCTA CAGCGAGGGG CACGGCAAAT TCCTGGCCGC TGCCCGGAAC CCTGCTGCTG
1621AACCCAGTCC AGGAGCCCCA GCCCCCCAGG AGCTCGGGGC TGCCGACAAG CATGGTGATC
1681TTTGTGAGGC GAGCCTCACC AACAGCGTGG AGCCTGCACA AGGAGAAGCC AGGGAGGGTT
1741CTTCCCAGGA CAACCCTACT GCACAGCCAG TCCTGCAGCT CCTTGGTGAG ATGCAGGACC
1801ACCAGGAGCA CCCAGGCTTG GGCAGCAACT GCTGTGTGCC ATGCTTTTGC TGGGCTTGGC
1861TGCCGAGAAG AAGGAGATTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt
1921gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)