Construct: ORF ccsbBroadEn_12028

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010448.1_s300c1, BRDN0000392401
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCBP3 (54039)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54039 PCBP3 poly(rC) binding protein 3 NM_001348242.1 92.2% 92.3% 327T>C;503_577del;622_624delCAG
2 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452117.1 92.2% 92.3% 327T>C;503_577del;622_624delCAG
3 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452118.1 92.2% 92.3% 327T>C;503_577del;622_624delCAG
4 human 54039 PCBP3 poly(rC) binding protein 3 NM_001130141.1 90.6% 90.7% 1_96del;423T>C
5 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452116.1 90.3% 90.4% 1_96del;423T>C;643_645delCAG
6 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452119.1 86.8% 86.6% (many diffs)
7 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452120.1 84.5% 84.6% (many diffs)
8 human 54039 PCBP3 poly(rC) binding protein 3 NM_001348238.2 84.5% 84.5% 1_96del;423T>C;599_673del
9 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452115.1 84.5% 84.5% 1_96del;423T>C;599_673del
10 human 54039 PCBP3 poly(rC) binding protein 3 NM_020528.2 84.2% 84.3% (many diffs)
11 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452113.1 84.2% 84.3% (many diffs)
12 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452114.1 84.2% 84.3% (many diffs)
13 human 54039 PCBP3 poly(rC) binding protein 3 NM_001348241.1 81.8% 81.9% (many diffs)
14 human 54039 PCBP3 poly(rC) binding protein 3 NM_001348239.2 79.5% 79.6% 1_96del;423T>C;601_744del
15 human 54039 PCBP3 poly(rC) binding protein 3 NM_001348240.2 79.3% 79.4% (many diffs)
16 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452111.1 79.3% 79.4% (many diffs)
17 human 54039 PCBP3 poly(rC) binding protein 3 NM_001348243.1 79% 79.1% (many diffs)
18 human 54039 PCBP3 poly(rC) binding protein 3 NM_001348244.2 78.8% 78.9% (many diffs)
19 human 54039 PCBP3 poly(rC) binding protein 3 NM_001348245.2 74.4% 74.5% (many diffs)
20 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452109.1 74.4% 74.5% 1_321del;648T>C
21 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452112.1 74.2% 74.3% (many diffs)
22 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452108.1 74.2% 74.3% 1_321del;648T>C;868_870delCAG
23 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452101.1 70.2% 70.3% 1_321del;648T>C;824_898del
24 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452099.1 70.1% 70.1% (many diffs)
25 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452095.1 68.4% 68.4% (many diffs)
26 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452093.1 66.8% 66.8% 1_321del;648T>C;826_969del
27 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452092.1 66.6% 66.7% (many diffs)
28 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452103.1 65.7% 65.8% (many diffs)
29 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452102.1 65.6% 65.6% (many diffs)
30 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452096.1 64.3% 60.5% (many diffs)
31 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452098.1 62.5% 62.6% (many diffs)
32 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452097.1 62.4% 62.4% (many diffs)
33 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452094.1 58% 53.6% (many diffs)
34 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452100.1 56.5% 52.7% (many diffs)
35 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452110.1 52.5% 52.2% (many diffs)
36 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452090.1 49.7% 39% (many diffs)
37 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452091.1 49.7% 39% (many diffs)
38 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452104.1 47.7% 42.7% (many diffs)
39 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452105.1 47.7% 42.7% (many diffs)
40 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452106.1 47.7% 42.7% (many diffs)
41 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452107.1 47.7% 42.7% (many diffs)
42 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452088.1 46.9% 36.7% (many diffs)
43 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452089.1 46.9% 36.7% (many diffs)
44 human 54039 PCBP3 poly(rC) binding protein 3 XR_002958616.1 46.1% (many diffs)
45 human 54039 PCBP3 poly(rC) binding protein 3 XR_002958612.1 45.2% (many diffs)
46 human 54039 PCBP3 poly(rC) binding protein 3 XR_002958610.1 44.3% (many diffs)
47 human 54039 PCBP3 poly(rC) binding protein 3 NR_145492.1 43.4% (many diffs)
48 human 54039 PCBP3 poly(rC) binding protein 3 XR_002958604.1 43.3% (many diffs)
49 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452086.1 42.3% 33.1% (many diffs)
50 human 54039 PCBP3 poly(rC) binding protein 3 XM_024452087.1 42.3% 33.1% (many diffs)
51 human 54039 PCBP3 poly(rC) binding protein 3 XR_002958607.1 40.5% (many diffs)
52 human 54039 PCBP3 poly(rC) binding protein 3 XR_002958606.1 40.4% (many diffs)
53 human 54039 PCBP3 poly(rC) binding protein 3 XR_002958615.1 40.4% (many diffs)
54 human 54039 PCBP3 poly(rC) binding protein 3 XR_002958613.1 40.4% (many diffs)
55 human 54039 PCBP3 poly(rC) binding protein 3 NR_145493.2 38.3% (many diffs)
56 human 54039 PCBP3 poly(rC) binding protein 3 XR_002958609.1 37.9% (many diffs)
57 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_011243517.2 80.3% 86.1% (many diffs)
58 mouse 59093 Pcbp3 poly(rC) binding protein 3 NM_001347216.1 78.5% 84.3% (many diffs)
59 mouse 59093 Pcbp3 poly(rC) binding protein 3 NM_021568.2 78.3% 84% (many diffs)
60 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_017314038.1 78.3% 84% (many diffs)
61 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_006513920.3 74% 79.3% (many diffs)
62 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_006513916.3 73.8% 79.1% (many diffs)
63 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_006513917.1 73.8% 79.1% (many diffs)
64 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_006513918.1 73.8% 79.1% (many diffs)
65 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_006513919.3 73.8% 79.1% (many diffs)
66 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_011243516.2 73.8% 79.1% (many diffs)
67 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_017314036.1 73.8% 79.1% (many diffs)
68 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_017314037.1 73.8% 79.1% (many diffs)
69 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_006513926.3 73.2% 78.9% (many diffs)
70 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_006513925.3 73% 78.7% (many diffs)
71 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_006513922.3 69% 74.3% (many diffs)
72 mouse 59093 Pcbp3 poly(rC) binding protein 3 XM_006513921.3 68.8% 74.1% (many diffs)
73 mouse 59093 Pcbp3 poly(rC) binding protein 3 XR_871722.2 38.6% (many diffs)
74 mouse 59093 Pcbp3 poly(rC) binding protein 3 XR_871719.2 38.5% (many diffs)
75 mouse 59093 Pcbp3 poly(rC) binding protein 3 XR_871720.2 38.3% (many diffs)
76 mouse 59093 Pcbp3 poly(rC) binding protein 3 XR_001779566.1 38.1% (many diffs)
77 mouse 59093 Pcbp3 poly(rC) binding protein 3 XR_380423.3 37.2% (many diffs)
78 mouse 59093 Pcbp3 poly(rC) binding protein 3 XR_380422.3 36.9% (many diffs)
79 mouse 59093 Pcbp3 poly(rC) binding protein 3 XR_380425.3 36.5% (many diffs)
80 mouse 59093 Pcbp3 poly(rC) binding protein 3 XR_380424.3 36.2% (many diffs)
81 mouse 59093 Pcbp3 poly(rC) binding protein 3 XR_380420.3 35.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1005
ORF length:
939
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GTCCAAGGTC TCAGAAGGTG GCCTGAATGT GACCCTCACC ATCCGCCTGC
121TGATGCATGG AAAGGAAGTT GGAAGCATCA TCGGGAAGAA AGGAGAAACT GTGAAGAAGA
181TGCGTGAGGA GAGTGGTGCA AGGATCAACA TCTCAGAGGG AAACTGCCCA GAGAGGATTG
241TGACCATCAC AGGCCCCACA GACGCCATCT TCAAGGCCTT TGCCATGATC GCATACAAGT
301TTGAGGAGGA TATCATCAAC TCCATGAGCA ACAGCCCTGC CACCAGCAAG CCCCCAGTGA
361CGCTGAGGCT GGTGGTGCCT GCCAGCCAGT GCGGGTCCCT GATCGGCAAA GGAGGCTCCA
421AGATCAAGGA GATCAGGGAG TCCACAGGTG CCCAGGTGCA GGTGGCTGGG GACATGCTGC
481CCAACTCCAC GGAGCGAGCG GTGACCATCT CGGGGACCCC AGATGCCATC ATCCAGTGCG
541TCAAGCAGAT CTGTGTGGTC ATGCTGGAGG CCTACACAAT CCAGGGACAG TATGCCATCC
601CTCACCCGGA TTTGACCAAG CTCCACCAGT TGGCCATGCA GCAAACCCCC TTTCCTCCCC
661TCGGACAGAC CAACCCCGCT TTCCCCGGAG AAAAGCTGCC TTTACACTCC TCCGAAGAAG
721CTCAAAATCT GATGGGCCAG TCATCAGGTC TGGACGCCAG CCCACCGGCC AGCACTCATG
781AGCTCACCAT TCCCAATGAT CTAATAGGCT GCATAATTGG ACGCCAAGGG ACCAAAATCA
841ATGAAATTCG ACAGATGTCT GGAGCTCAGA TCAAAATCGC CAACGCCACG GAAGGGTCCT
901CAGAGCGTCA GATCACCATC ACGGGGACCC CGGCCAACAT CAGCCTTGCC CAGTATCTCA
961TCAACGCCAG GCTGACGTCC GAGGTCACCG GGATGGGCAC GCTGTACCCA ACTTTCTTGT
1021ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)