Construct: ORF ccsbBroadEn_12038
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015529.1_s300c1, BRDN0000385705
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STAG3L1 (54441)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 442582 | STAG3L2 | stromal antigen 3-like 2 (p... | NR_040584.2 | 12.5% | 1_738del;771C>T;976_1874del | |
| 2 | human | 378108 | TRIM74 | tripartite motif containing 74 | XR_002956445.1 | 11.6% | (many diffs) | |
| 3 | human | 54441 | STAG3L1 | stromal antigen 3-like 1 (p... | NR_040583.2 | 11% | 1_994del;1232_2138del | |
| 4 | human | 442578 | STAG3L3 | stromal antigen 3-like 3 (p... | NR_040582.2 | 10.9% | 1_1013del;1251_2167del | |
| 5 | human | 378108 | TRIM74 | tripartite motif containing 74 | XR_001744735.1 | 10.9% | 1_646del;884_2172del | |
| 6 | human | 378108 | TRIM74 | tripartite motif containing 74 | XR_001744750.1 | 10.5% | 1_725del;963_2251del | |
| 7 | human | 378108 | TRIM74 | tripartite motif containing 74 | XR_001744736.1 | 10.4% | 1_734del;972_2260del | |
| 8 | human | 378108 | TRIM74 | tripartite motif containing 74 | XR_001744739.2 | 9.8% | 1_878del;1116_2404del | |
| 9 | human | 378108 | TRIM74 | tripartite motif containing 74 | XR_001744737.2 | 9.6% | 1_918del;1156_2444del | |
| 10 | human | 10734 | STAG3 | stromal antigen 3 | NM_001282718.2 | 6.2% | 5.1% | (many diffs) |
| 11 | human | 10734 | STAG3 | stromal antigen 3 | XM_017011687.1 | 6.1% | 5.1% | (many diffs) |
| 12 | human | 10734 | STAG3 | stromal antigen 3 | NM_001282716.1 | 5.9% | 4.9% | (many diffs) |
| 13 | human | 10734 | STAG3 | stromal antigen 3 | NM_012447.4 | 5.9% | 4.9% | (many diffs) |
| 14 | human | 10734 | STAG3 | stromal antigen 3 | NM_001282717.1 | 5.9% | 4.9% | (many diffs) |
| 15 | human | 10734 | STAG3 | stromal antigen 3 | XM_011515742.1 | 5.9% | 4.9% | (many diffs) |
| 16 | human | 10734 | STAG3 | stromal antigen 3 | XM_017011686.2 | 5.8% | 4.8% | (many diffs) |
| 17 | human | 10734 | STAG3 | stromal antigen 3 | XM_017011683.2 | 5.8% | 4.8% | (many diffs) |
| 18 | human | 10734 | STAG3 | stromal antigen 3 | XM_017011684.1 | 5.8% | 4.8% | (many diffs) |
| 19 | human | 10734 | STAG3 | stromal antigen 3 | XM_017011685.1 | 5.8% | 4.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 303
- ORF length:
- 237
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG TGGAAGAGAG CAACGCCAGA GCCCAGGTGC CCAGAGGACT TTCTTCCAGC 121 TTCTGCTGTC CTTCTTTGTG GAGAGCAAGC TCCACGACCA CGCTGCTTAC TTAGTAGACA 181 ACCTGTGGGA CTGTGCAGGG ACTCAGCTGA AGGACTGGGA GGGTCTGACA AGCCTGCTGC 241 TGGAGAAGGA CCAGAGCACG TGCCACATGG AGCCAGGGCC AGGGACCTTC CACCTCCTAG 301 GGTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 361 gcaacgaac