Construct: ORF ccsbBroadEn_13076

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014938.1_s300c1, BRDN0000396856
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CTAGE7P (119437)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4253 MIA2 MIA SH3 domain ER export fa... NM_005930.4 91.9% 86.2% (many diffs)
2 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001247989.1 91.4% 85.6% (many diffs)
3 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354150.2 91.1% 84.7% (many diffs)
4 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354151.2 90.9% 85.2% (many diffs)
5 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021314.1 90.4% 84.7% (many diffs)
6 human 4253 MIA2 MIA SH3 domain ER export fa... NM_203354.3 90.2% 84.5% (many diffs)
7 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021315.2 89.5% 83.3% (many diffs)
8 human 4253 MIA2 MIA SH3 domain ER export fa... XM_011536778.2 89.2% 83.5% (many diffs)
9 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354157.2 89% 83.7% (many diffs)
10 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354137.1 88.8% 83.5% (many diffs)
11 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354138.1 88.8% 83.5% (many diffs)
12 human 4253 MIA2 MIA SH3 domain ER export fa... NM_203356.2 88.8% 83.5% (many diffs)
13 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021316.1 88.7% 83% (many diffs)
14 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354154.2 87.7% 80.9% (many diffs)
15 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021317.2 87.3% 82.1% (many diffs)
16 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021318.1 87.3% 82.1% (many diffs)
17 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021319.1 87.3% 82.1% (many diffs)
18 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021330.1 87.3% 82.1% (many diffs)
19 human 4253 MIA2 MIA SH3 domain ER export fa... NM_203355.3 87% 81.6% (many diffs)
20 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354152.2 86.1% 80.7% (many diffs)
21 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354147.1 85.9% 81% (many diffs)
22 human 119437 CTAGE7P CTAGE family member 7, pseu... NR_044994.1 85.8% (many diffs)
23 human 100142659 CTAGE8 CTAGE family member 8 NM_001278507.1 85.6% 76.4% (many diffs)
24 human 100128553 CTAGE4 CTAGE family member 4 NM_198495.2 85.6% 76.1% (many diffs)
25 human 643854 CTAGE9 CTAGE family member 9 NM_001145659.1 85.6% 76% (many diffs)
26 human 441294 CTAGE15 CTAGE family member 15 NM_001008747.2 85.4% 76.1% (many diffs)
27 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354146.2 85.3% 79.9% (many diffs)
28 human 340307 CTAGE6 CTAGE family member 6 NM_178561.5 85.2% 75.9% (many diffs)
29 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354148.1 84.6% 78.2% (many diffs)
30 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354153.2 84.1% 79.2% (many diffs)
31 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001247988.1 84% 78.9% (many diffs)
32 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354139.1 84% 78.9% (many diffs)
33 human 64693 CTAGE1 cutaneous T cell lymphoma-a... NM_172241.3 83.7% 76.1% (many diffs)
34 human 112268382 LOC112268382 cTAGE family member 4-like XR_002959124.1 83.7% (many diffs)
35 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354140.2 83.1% 78.2% (many diffs)
36 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354141.2 83.1% 78.2% (many diffs)
37 human 4253 MIA2 MIA SH3 domain ER export fa... XM_011536785.2 83.1% 78.2% (many diffs)
38 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354155.2 82.8% 76.3% (many diffs)
39 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001247990.2 82.5% 77.7% (many diffs)
40 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021323.1 81.7% 76.9% (many diffs)
41 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021324.2 81.7% 76.9% (many diffs)
42 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449598.1 81.7% 76.9% (many diffs)
43 human 647288 CTAGE11P CTAGE family member 11, pse... NR_027466.1 81.2% (many diffs)
44 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354149.1 81% 76.5% (many diffs)
45 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354156.2 80.1% 75.7% (many diffs)
46 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354142.1 78.2% 73.6% (many diffs)
47 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354143.1 78.2% 73.6% (many diffs)
48 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354144.2 78.2% 73.6% (many diffs)
49 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021327.1 78.2% 73.6% (many diffs)
50 human 220429 CTAGE10P CTAGE family member 10, pse... NR_003268.3 74.3% (many diffs)
51 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354145.2 74% 68.3% (many diffs)
52 human 4253 MIA2 MIA SH3 domain ER export fa... NR_148722.2 61.8% (many diffs)
53 human 4253 MIA2 MIA SH3 domain ER export fa... NR_148721.1 60.4% (many diffs)
54 human 4253 MIA2 MIA SH3 domain ER export fa... NR_148723.2 59.1% (many diffs)
55 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001329214.3 51.6% 48.3% (many diffs)
56 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449594.1 51.4% 48.1% (many diffs)
57 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449593.1 51.3% 48% (many diffs)
58 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449592.1 51.1% 47.8% (many diffs)
59 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449596.1 48.9% 45.7% (many diffs)
60 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449595.1 48.4% 45.3% (many diffs)
61 human 4253 MIA2 MIA SH3 domain ER export fa... XR_002957555.1 36.8% (many diffs)
62 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449597.1 36.1% 32.1% (many diffs)
63 human 4253 MIA2 MIA SH3 domain ER export fa... XR_002957554.1 22% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2499
ORF length:
2433
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT GGAGCCAGGG GCTACCCCTC AGCGGTACTT GGGGCTGGTC CTGGGGGAGC
121CACGCAGGGT TGTGGCAGCG CTGCCTGAAA GTATGAGACT GGATTCGAAT CCTCATGGTT
181TTCCATGGGA AATGGTGATA TGTGCAGCTG TTGCTGCATT TTTTGCTGTT CTCCTTTTTC
241TGTGGAGAAG TTTTAGATCG GTTAGGAGTC GGCTTTATGT GGGAAGAGAG AAAAAGCTTG
301CTATAATGCT TTCTGGACTA ATTGAAGAAA AATGTAAACT ACTTGAAAAA TTTAGCCTTG
361TTCAAAAAGA GTATGAAGAC TATGAAGTAG CGTCATCGTT AGAGGATGCC AGCTTTGAGA
421AGGCGGCAGC AGAAGCACGA AGTTTGGAGG CAACCTGTGA AAAGTTGAAC AGGTCCAATT
481CTGAACTTGA GCATGAAATT CTCTGTCTAG AAAAAGAGTT AAAAGAAGAG AAATCTAAAC
541ATTCGCAACA AAATGAATTG ATGGCGGATA TTTCAAAAAC GATACAGCCT CTAGCAGATG
601AGTCAGAATC CCTCAAATCA CAAGTAGCTG AAGCCAAAAT GATCTTCAAG AGATTTAAAA
661TGACTGAGAA ACAACTGAAG ATAGCAATAA AAGATGCTTT GAATGAAAAC TCTCACCTTC
721AGGAAAGCCA GAAACAGCTT TTGCAAGAAG CTGAAGTATG GAACGAACAA GTGAATGAAC
781TTAATAAACA GAAAATAACA TTTGAAGACT CTAAAGTACA TGCAGAACAA GTTCTAAATG
841ATAAAGAAAA TCACATCAAG ACTCTGACTG AACATTTGCT AAAGATGAAA GATTGGGCTG
901CTAGGCTTAG AGAAGACGTA ACGGATGATG ATAACTTAGA AGTGAACAGT GAATCAGAAG
961ATGGTGCTTA CTTAGATGAT CCTCTAAAAG GAGCTCTGAA GAAACTGATT CATGCTACTA
1021AGTTAAATGC TTCTTTAAAA ACCTTAGAAG GAGAAAGAAA CCAAATTTAT ATCCAGTTAC
1081CTGAAATTGA TAAAACAAAG GAAGAGCTTA CAGAGCATAT TAAAAATCTT CGGACTGAAC
1141AAGCATCTTT GCAGTCAGAA AACACACATT TTGAAAGTGA GAATCAGAAG CTTCAACAGA
1201AACTTAAAGT AATGACTGAA TTATATCAAG AAAATGAAAT GAAACTCTAC AGGAAATTAA
1261CAGTAGAGGA AAATAGCCGG TTAGAGAAAG AAGAGAAACT TTCTAAGGTA GACAAAAAGA
1321TCAGCCATGC CACTAAAGAG CTGGAGACCT ACAGACAGCG AGCCAAAGAT CTTGAAGAAG
1381AATTGGAGAG AACTATTCAT TATTATCAAC GGCAGATTAT TTCCCATGAG AAAAAGGCAC
1441ATCATAACTG GTTGGCAGCT TGGGCTGCTG AAAGAAACCT CAATGATTTA AGGAAAGAAA
1501ATGCTCACAA CAGACAAAAA TTAGCTGAAA CAGAGTATAA AATAAAACTT CTAAAAAAAG
1561ATCCTTATGT ACTTGATGTT CCAAATACAG CATTTGGCAG AGAGCATTCC CCATATGGTC
1621CCTCATCATT GAGTCGGCCT TCATCTGAAA CGAGAGCTTT TCTCTCTCCC GCAACTCTGT
1681TGGAGGGTCC ACTCAGACTC TCACCTTTGC CTCCAGGGGG GGAAGGAAGA GGCTCAAGAG
1741GCCCAGGGAA TCCTCTGGAC CATCAGATTA CCAAGGAAAG AGGAGAATCA AGCTGTGAAA
1801GGTTAACCGA TCCTCACAGG TCTCCTTCTG ACACTGGGTC CCTGTCACTT CTGAGGGAAC
1861AGGACCGTAG GATGATGTTT CCTCCACCAG CGCAATCATA TCTTGATTCA GCTCTTCCTC
1921CACAAAGGCA AGACAGATTT TATTCTAACT CTGGTGGACT GTCTGGACCA GCAGAACTCA
1981GAAGTTTTAA TATGCCTCCT TTGGATAAAA TGGATGGGTC AATGCCTTCA GAAATGGAAT
2041CCAGTAGAAA TGACACCAAA GATGATCTTG GTAATTTAAA TATCCCTGAT TCATCTCTCC
2101CTGCTGAAAA TGCAGCAACT GGCCCTCGCT TTGTTCCTCC ACCTCTTGCC CTAATCAGAG
2161GTCCACTGTT TCCAGTGGAT ACAAGGGGCC CGTTCATGAG AAGAGCACCT CCTTTCCCCC
2221CACCTCCTCC AGGAACCAGG TTTGGAGCTT CTCGAGATTA TTTTCCACCA GGGGATTTCC
2281CAGGTCCACC ACATGCTCCG TTTGCAATGA GAAATGTCTA TCCACCGAGG GGTTTTCCTC
2341CTTACCCTCC CCCAAGACCT GGATTTTTCC CCCGACCCCC ACATTCTGAA GGTAGAAGTG
2401AGTTCCCTTC AGGGCTGATT CCGCCTTCAA ATGAGCCTGC TACGGAACAT CCAAAACCGC
2461AGCAAGATAC CTGGCAATAT TTTTGCTCTC TTCAAAAGTA CCCAACTTTC TTGTACAAAG
2521Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)