Construct: ORF ccsbBroadEn_13469
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004934.1_s300c1, BRDN0000387313
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF718 (255403)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_001348280.2 | 81% | 66.6% | (many diffs) |
| 2 | human | 107986244 | LOC107986244 | zinc finger protein 141-like | XM_017008889.1 | 69.6% | 58.5% | (many diffs) |
| 3 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_001348279.2 | 57.3% | 50% | (many diffs) |
| 4 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_001348278.2 | 42.6% | 34.8% | (many diffs) |
| 5 | human | 255403 | ZNF718 | zinc finger protein 718 | NR_110527.1 | 21.8% | (many diffs) | |
| 6 | human | 255403 | ZNF718 | zinc finger protein 718 | NM_001039127.6 | 18.2% | 15.4% | (many diffs) |
| 7 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_003441.4 | 18% | 14.7% | (many diffs) |
| 8 | human | 7700 | ZNF141 | zinc finger protein 141 | XM_017008591.2 | 16% | 12.9% | (many diffs) |
| 9 | human | 654254 | ZNF732 | zinc finger protein 732 | NM_001137608.3 | 14.1% | 11.4% | (many diffs) |
| 10 | human | 152687 | ZNF595 | zinc finger protein 595 | NM_182524.4 | 13.1% | 10.8% | (many diffs) |
| 11 | human | 255403 | ZNF718 | zinc finger protein 718 | NM_001289930.1 | 11.6% | 9% | (many diffs) |
| 12 | human | 255403 | ZNF718 | zinc finger protein 718 | NM_001289931.1 | 11.6% | 9% | (many diffs) |
| 13 | human | 255403 | ZNF718 | zinc finger protein 718 | XM_017007979.2 | 11.6% | 9% | (many diffs) |
| 14 | human | 255403 | ZNF718 | zinc finger protein 718 | XM_017007980.2 | 11.6% | 9% | (many diffs) |
| 15 | human | 112268317 | LOC112268317 | zinc finger protein 195-like | XR_002958858.1 | 10.1% | (many diffs) | |
| 16 | human | 152687 | ZNF595 | zinc finger protein 595 | XM_011513398.2 | 8.6% | 6.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 354
- ORF length:
- 288
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA ACTCTTAACA TTCAAGGATG TGGCCATAGA ATTCTCTCCA GAAGAGTGGA 121 AATGTCTGGA CATTTCCCAG CAGAATTTAT ATAGAGATGT GATGTTGGAG AACTACAGAA 181 ACCTGGTCTC CCTGGGTGTT ACTATCTCTA ACCCAGACCT GGTCACCAGT CTGGAGCAAA 241 GAAAAGAGCC CTACAATTTG AAGATACATG AAACAGCAGC CAGACCCCCA GTGATCTCCC 301 TTCAAGTTTA CAGGGAGTGC CAGTGTCCAC TTTATCACTT ACAAAGGGCT ACATGCCCAA 361 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac