Construct: ORF ccsbBroadEn_13596

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004663.1_s300c1, BRDN0000389863
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CTAGE6 (340307)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 340307 CTAGE6 CTAGE family member 6 NM_178561.5 94.1% 92.2% 1_134del;186delT;1235A>G
2 human 441294 CTAGE15 CTAGE family member 15 NM_001008747.2 93.9% 91.7% (many diffs)
3 human 100142659 CTAGE8 CTAGE family member 8 NM_001278507.1 92.5% 88.9% (many diffs)
4 human 100128553 CTAGE4 CTAGE family member 4 NM_198495.2 92.4% 88.6% (many diffs)
5 human 643854 CTAGE9 CTAGE family member 9 NM_001145659.1 92.1% 87.9% (many diffs)
6 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354148.1 87.4% 77.6% (many diffs)
7 human 64693 CTAGE1 cutaneous T cell lymphoma-a... NM_172241.3 87.1% 74.3% (many diffs)
8 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354137.1 86.4% 77.3% (many diffs)
9 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354138.1 86.4% 77.3% (many diffs)
10 human 4253 MIA2 MIA SH3 domain ER export fa... NM_203356.2 86.4% 77.3% (many diffs)
11 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021317.2 84.9% 75.9% (many diffs)
12 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021318.1 84.9% 75.9% (many diffs)
13 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021319.1 84.9% 75.9% (many diffs)
14 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021330.1 84.9% 75.9% (many diffs)
15 human 4253 MIA2 MIA SH3 domain ER export fa... NM_203354.3 84.5% 75.6% (many diffs)
16 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354154.2 84.1% 74.7% (many diffs)
17 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354140.2 84% 76.4% (many diffs)
18 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354141.2 84% 76.4% (many diffs)
19 human 4253 MIA2 MIA SH3 domain ER export fa... XM_011536785.2 84% 76.4% (many diffs)
20 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354150.2 83.9% 75.1% (many diffs)
21 human 4253 MIA2 MIA SH3 domain ER export fa... XM_011536778.2 83.6% 74.8% (many diffs)
22 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001247990.2 83.5% 75.9% (many diffs)
23 human 4253 MIA2 MIA SH3 domain ER export fa... NM_005930.4 83.3% 74.5% (many diffs)
24 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354147.1 83.2% 74.5% (many diffs)
25 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021316.1 83.1% 74.3% (many diffs)
26 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001247989.1 82.8% 74.1% (many diffs)
27 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021323.1 82.5% 75% (many diffs)
28 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021324.2 82.5% 75% (many diffs)
29 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449598.1 82.5% 75% (many diffs)
30 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021315.2 82.5% 73.8% (many diffs)
31 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354151.2 82.4% 73.7% (many diffs)
32 human 112268382 LOC112268382 cTAGE family member 4-like XR_002959124.1 82.3% (many diffs)
33 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021314.1 81.9% 73.2% (many diffs)
34 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001247988.1 81.5% 73.1% (many diffs)
35 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354139.1 81.5% 73.1% (many diffs)
36 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354156.2 80.8% 73.5% (many diffs)
37 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354157.2 80.2% 71.8% (many diffs)
38 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354145.2 79.8% 72.2% (many diffs)
39 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354146.2 79.8% 71.5% (many diffs)
40 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354155.2 79.3% 70.5% (many diffs)
41 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354142.1 79.1% 72.1% (many diffs)
42 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354143.1 79.1% 72.1% (many diffs)
43 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354144.2 79.1% 72.1% (many diffs)
44 human 4253 MIA2 MIA SH3 domain ER export fa... XM_017021327.1 79.1% 72.1% (many diffs)
45 human 4253 MIA2 MIA SH3 domain ER export fa... NM_203355.3 78.6% 70.4% (many diffs)
46 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354149.1 78.3% 70.2% (many diffs)
47 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354152.2 77.7% 69.6% (many diffs)
48 human 647288 CTAGE11P CTAGE family member 11, pse... NR_027466.1 77% (many diffs)
49 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001354153.2 75.5% 67.7% (many diffs)
50 human 119437 CTAGE7P CTAGE family member 7, pseu... NR_044994.1 69.4% (many diffs)
51 human 220429 CTAGE10P CTAGE family member 10, pse... NR_003268.3 65.9% (many diffs)
52 human 4253 MIA2 MIA SH3 domain ER export fa... NR_148723.2 55.8% (many diffs)
53 human 4253 MIA2 MIA SH3 domain ER export fa... NR_148722.2 54.8% (many diffs)
54 human 4253 MIA2 MIA SH3 domain ER export fa... NR_148721.1 53.5% (many diffs)
55 human 4253 MIA2 MIA SH3 domain ER export fa... NM_001329214.3 47.5% 42.5% (many diffs)
56 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449594.1 47.3% 42.3% (many diffs)
57 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449593.1 47.2% 42.2% (many diffs)
58 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449592.1 47% 42% (many diffs)
59 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449596.1 44.8% 40.1% (many diffs)
60 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449595.1 44.3% 39.7% (many diffs)
61 human 4253 MIA2 MIA SH3 domain ER export fa... XR_002957555.1 35.3% (many diffs)
62 human 4253 MIA2 MIA SH3 domain ER export fa... XM_024449597.1 34.7% 29.8% (many diffs)
63 human 4253 MIA2 MIA SH3 domain ER export fa... XR_002957554.1 20.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2262
ORF length:
2196
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTG CAGCTGTTAT TGGATTTTTT GTTGTTCTCC TTTTTTTGTG GAGAAGTTTA
121GATCGGTTAG GAGTCGGCTT TACGTGGGAA GAGAGCAAAA ACTTGGTGCA ACGCTTTCTG
181GACTAATTGA AGAAAAATGT AAACTACTTG AAAAGTTTAG CCTTATTCAA AAAGAGTATG
241AAGGCTATGA AGTAGAGTCA TCTTTAGAGG ATGCCAGCTT TGAGAAGGCG GCAGCAGAAG
301AAGCACGAAG TTTGGAGGCA ACCTGTGAAA AGCTGAACAG GTCCAATTCT GAACTTGAGG
361ATGAAATCCT CTGTCTAGAA AAAGACTTAA AAGAAGAGAA ATCTAAACAT TCTCAACAAG
421ATGAATTGAT GGCGGATATT TCAAAAAGTA TACAGTCTCT AGAAGATGAG TCAAAATCCC
481TCAAATCACA AATAGCTGAA GCCAAAATCA TCTGCAAGAC ATTTAAAATG AGTGAAGAAC
541GACGGGCTAT AGCAATAAAA GATGCTTTGA ATGAAAATTC TCAACTTCAG ACAAGCCATA
601AACAGCTTTT TCAGCAAGAA GCTGAAGTAT GGAAAGGAGA AGTGAGTGAA CTTAATAAAC
661AGAAAATAAC ATTTGAAGAC TCCAAAGTAC ACGCAGAACA AGTTCTGAAT GATAAAGAAA
721ATCACATCAA GACCCTGACT GGACACTTGC CAATGATGAA AGATCAGGCT GCTGTGCTTG
781AAGAAGACAC AACGGATGAT GATAACCTGG AATTAGAAGT GAACAGTCAA TGGGAAAATG
841GTGCTAACTT AGATGATCCT CTGAAAGGAG CTTTGAAGAA ACTGATTCAT GCTGCTAAGT
901TAAATGTTTC TTTAAAAAGC TTAGAAGGAG AAAGAAACCA CATTATTATT CAGTTATCTG
961AAGTGGACAA AACAAAGGAA GAGCTTACAG AGCATATTAA AAATCTTCAG ACTCAACAAG
1021AATCTTTGCA ATCAGAAAAC ATATATTTTG AAAGTGAGAA TCAGAAGCTT CAACAGAAAC
1081TTAAAATAAT GACTGAATTC TATCAAGAAG ATGAAATGAA ACTCTATAGG AAATTAACAG
1141TGGAGGAAAA TTACCGAATA GAGGGAGAAG AGAAGCTTTC TAAAGTGGAA GAAAAGCTCA
1201GCCGTGCCAC TGAACAGCTG GAGACCTATA GAAAGCTAGC CAAAGATCTT GAAGAAGAAT
1261TGGAGAGAAC TGTTCATTTT TATCAAAAGC AGGTTATTTC CTACGAGAAA AGAGGACATG
1321ATAATTGGTT GGCAGCTCGG ACTGCTGAAA GAAACCTCAG TGATTTAAGG AAAGAAAATG
1381CTCACAACAA ACAAAAATTA ACTGAAACAG AGTTGAAATT TGAACTTTTA GAAAAAGATC
1441CTAATGCACT TGATGTTTCA AATACAGCAT TTGGCAGAGA GCATGCCCCG AATGGTCCCG
1501CACCATTGGG TCAGCGTTCA TCTGAAACGA GAGCTTTTCT CTCTCCTCAA ACTTTGTTGG
1561AGGATCCACT GGGACTCTCA CCTGTGCTTC CGGAGGGAGG AGGAAGAGGC CCAAGAGGCC
1621CAGGGAATCC CCTGGACCAT CAGATTACCA ATGAAAGAGG AGAACCAAGC TGTGACAGGT
1681TAACCGATCC TCACAGGGCT CCTTCTGACA CTGGGTCCCT GTCATCTCCG GTGGAACAGG
1741ACTGTAAGAT GATGTTTCCT CCACCAGGAC AATCATATCC TGATTCAGCT CTTCCTCCTC
1801AAAGGGAAGA CAGATTTTAT TCTAATTCTG AAAGACTGTC TGGATCAGCA GAACCCAGAA
1861GTTTTAAAAT GACTTCTTTG GATAAAATGG ATGGGTCAAT GCCTTCAGAA ATGGAATCCA
1921GTAGAAATGA TGCCAAAGAT GATCTTGGTA ATTTAAATGT GCCTGATTCA TCTCTCCCTG
1981CTGAAAATGA AGCAACTGGC CCTGGCTTTA TTCCTCCACC TCTTGCTCCA GTCAGAGGAC
2041CATTGTTTCC AGTGGATACA AGGGGCCCGT TCATGAGAAG AGGACCTCCT TTCCCCCCAC
2101CTCCTCCAGG AACCATGTTT GGAGCTTCTC GAGGTTATTT TCCACCAAGG GATTTCCCAG
2161GTCCACCACA TGCTCCATTT GCAATGAGAA ACATCTACCC ACCGAGGGGT TTACCTCCTT
2221ACTTTCACCC GAGACCTGGA TTTTACCCCA ACCCCGCATT CTGCCCAACT TTCTTGTACA
2281AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)