Construct: ORF ccsbBroadEn_13646
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001836.1_s300c1, BRDN0000394080
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF808 (388558)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 107987264 | LOC107987264 | putative zinc finger protei... | XR_002958390.1 | 22.1% | (many diffs) | |
| 2 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351773.1 | 11.3% | 1.4% | (many diffs) |
| 3 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351774.2 | 11.3% | 1.4% | (many diffs) |
| 4 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351775.2 | 11.3% | 1.4% | (many diffs) |
| 5 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351776.2 | 11.3% | 1.4% | (many diffs) |
| 6 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_207333.3 | 11.3% | 1.4% | (many diffs) |
| 7 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958279.1 | 8.1% | (many diffs) | |
| 8 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958278.1 | 8.1% | (many diffs) | |
| 9 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958277.1 | 8% | (many diffs) | |
| 10 | human | 7696 | ZNF137P | zinc finger protein 137, ps... | NR_023311.1 | 8% | (many diffs) | |
| 11 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958275.1 | 7.7% | (many diffs) | |
| 12 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958276.1 | 7.7% | (many diffs) | |
| 13 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_001753616.2 | 7.3% | (many diffs) | |
| 14 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 5.3% | (many diffs) | |
| 15 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_935832.3 | 5% | (many diffs) | |
| 16 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 5% | (many diffs) | |
| 17 | human | 344787 | ZNF860 | zinc finger protein 860 | NM_001137674.3 | 4.9% | 2.4% | (many diffs) |
| 18 | human | 344787 | ZNF860 | zinc finger protein 860 | XM_017006299.1 | 4.9% | 2.4% | (many diffs) |
| 19 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_002958314.1 | 4.8% | (many diffs) | |
| 20 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102301.2 | 4.3% | (many diffs) | |
| 21 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102300.2 | 4.2% | (many diffs) | |
| 22 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102299.2 | 4.2% | (many diffs) | |
| 23 | human | 7576 | ZNF28 | zinc finger protein 28 | NR_163139.1 | 4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 291
- ORF length:
- 225
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT TGTGGCAAAG CCTTTACTTC ACATTCACAC CTCGTTGGAC ATCAGAGAAT 121 CCATACTGGA CAGAAATCTT GCAAATGTCA TCAGTGTGGC AAGGTCTTCA GTCCGAGGTC 181 ACTCCTTGCA GAACATGAGA AAATTCATTT TTGAGATAAC TGTTCCCAAT GCAGTGAGTA 241 TAGCAAACCA TCAAGCATTA ATTGACATTG GAGTCAATTC AGCATTGACT TGCCCAACTT 301 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac