Construct: ORF ccsbBroadEn_13646

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001836.1_s300c1, BRDN0000394080
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF808 (388558)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 107987264 LOC107987264 putative zinc finger protei... XR_002958390.1 22.1% (many diffs)
2 human 162967 ZNF320 zinc finger protein 320 NM_001351773.1 11.3% 1.4% (many diffs)
3 human 162967 ZNF320 zinc finger protein 320 NM_001351774.2 11.3% 1.4% (many diffs)
4 human 162967 ZNF320 zinc finger protein 320 NM_001351775.2 11.3% 1.4% (many diffs)
5 human 162967 ZNF320 zinc finger protein 320 NM_001351776.2 11.3% 1.4% (many diffs)
6 human 162967 ZNF320 zinc finger protein 320 NM_207333.3 11.3% 1.4% (many diffs)
7 human 162967 ZNF320 zinc finger protein 320 XR_002958279.1 8.1% (many diffs)
8 human 162967 ZNF320 zinc finger protein 320 XR_002958278.1 8.1% (many diffs)
9 human 162967 ZNF320 zinc finger protein 320 XR_002958277.1 8% (many diffs)
10 human 7696 ZNF137P zinc finger protein 137, ps... NR_023311.1 8% (many diffs)
11 human 162967 ZNF320 zinc finger protein 320 XR_002958275.1 7.7% (many diffs)
12 human 162967 ZNF320 zinc finger protein 320 XR_002958276.1 7.7% (many diffs)
13 human 162967 ZNF320 zinc finger protein 320 XR_001753616.2 7.3% (many diffs)
14 human 55762 ZNF701 zinc finger protein 701 XR_001753715.2 5.3% (many diffs)
15 human 388558 ZNF808 zinc finger protein 808 XR_935832.3 5% (many diffs)
16 human 55762 ZNF701 zinc finger protein 701 XR_001753716.2 5% (many diffs)
17 human 344787 ZNF860 zinc finger protein 860 NM_001137674.3 4.9% 2.4% (many diffs)
18 human 344787 ZNF860 zinc finger protein 860 XM_017006299.1 4.9% 2.4% (many diffs)
19 human 388558 ZNF808 zinc finger protein 808 XR_002958314.1 4.8% (many diffs)
20 human 90333 ZNF468 zinc finger protein 468 NR_102301.2 4.3% (many diffs)
21 human 90333 ZNF468 zinc finger protein 468 NR_102300.2 4.2% (many diffs)
22 human 90333 ZNF468 zinc finger protein 468 NR_102299.2 4.2% (many diffs)
23 human 7576 ZNF28 zinc finger protein 28 NR_163139.1 4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
291
ORF length:
225
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT TGTGGCAAAG CCTTTACTTC ACATTCACAC CTCGTTGGAC ATCAGAGAAT
121CCATACTGGA CAGAAATCTT GCAAATGTCA TCAGTGTGGC AAGGTCTTCA GTCCGAGGTC
181ACTCCTTGCA GAACATGAGA AAATTCATTT TTGAGATAAC TGTTCCCAAT GCAGTGAGTA
241TAGCAAACCA TCAAGCATTA ATTGACATTG GAGTCAATTC AGCATTGACT TGCCCAACTT
301TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)