Construct: ORF ccsbBroadEn_14485
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004530.1_s300c1, BRDN0000393593
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SIMC1 (375484)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 375484 | SIMC1 | SUMO interacting motifs con... | NM_001308200.1 | 99.8% | 99.6% | 13T>A |
| 2 | human | 375484 | SIMC1 | SUMO interacting motifs con... | NM_198567.5 | 71.6% | 70.6% | (many diffs) |
| 3 | human | 375484 | SIMC1 | SUMO interacting motifs con... | NR_131772.2 | 52.5% | (many diffs) | |
| 4 | human | 375484 | SIMC1 | SUMO interacting motifs con... | XM_017009455.1 | 41.8% | 41.2% | (many diffs) |
| 5 | human | 375484 | SIMC1 | SUMO interacting motifs con... | XM_017009456.1 | 41.8% | 41.2% | (many diffs) |
| 6 | human | 375484 | SIMC1 | SUMO interacting motifs con... | XM_011534556.2 | 37.7% | 37.2% | (many diffs) |
| 7 | human | 375484 | SIMC1 | SUMO interacting motifs con... | NM_001308196.1 | 37.5% | 37% | (many diffs) |
| 8 | human | 375484 | SIMC1 | SUMO interacting motifs con... | XM_017009454.1 | 37.5% | 37% | (many diffs) |
| 9 | human | 375484 | SIMC1 | SUMO interacting motifs con... | NM_001308195.2 | 36.7% | 36.2% | (many diffs) |
| 10 | human | 375484 | SIMC1 | SUMO interacting motifs con... | XM_011534553.2 | 36.5% | 36% | (many diffs) |
| 11 | human | 375484 | SIMC1 | SUMO interacting motifs con... | XM_011534554.2 | 36.5% | 36% | (many diffs) |
| 12 | mouse | 319719 | Simc1 | SUMO-interacting motifs con... | XM_006517277.1 | 80% | 83.7% | (many diffs) |
| 13 | mouse | 319719 | Simc1 | SUMO-interacting motifs con... | XM_017315526.1 | 80% | 83.7% | (many diffs) |
| 14 | mouse | 319719 | Simc1 | SUMO-interacting motifs con... | XM_011244530.1 | 22.1% | 22.4% | (many diffs) |
| 15 | mouse | 319719 | Simc1 | SUMO-interacting motifs con... | XM_011244531.1 | 22.1% | 22.4% | (many diffs) |
| 16 | mouse | 319719 | Simc1 | SUMO-interacting motifs con... | XM_011244529.1 | 20.9% | 21.2% | (many diffs) |
| 17 | mouse | 319719 | Simc1 | SUMO-interacting motifs con... | XM_011244528.1 | 20.4% | 20.6% | (many diffs) |
| 18 | mouse | 319719 | Simc1 | SUMO-interacting motifs con... | NM_176987.4 | 20.3% | 21.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1065
- ORF length:
- 999
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC TAGATCCATT GAACAAGTAA TAATACTTAA AAAATGGTTT CTGAAACCTT 121 ATAAGGGACA AACTCTGCCT GGGCGAGTCC TTTTCCTGCG TTATGTCGTT CAGACCCTAG 181 AAGATGACTT TCAGCAGACC CTGAGGAGGC AACGGCAGCA CCTGCAGCAA TCCATTGCAA 241 ACATGGTGCT TTCCTGTGAC AAGCAGCCCC ACAATGTCAG GGATGTTATC AAGTGGCTGG 301 TCAAAGCAGT AACTGAAGAT GGATTGACTC AGCCCCCAAA TGGAAATCAA ACGTCTTCAG 361 GAACAGGAAT CTTGAAAGCC AGCAGTAGCC ACCCTTCTTC CCAGCCCAAC CTGACAAAGA 421 ACACCAATCA GCTGATTGTG TGCCAGCTTC AGAGGATGCT CTCCATAGCC GTAGAGGTGG 481 ACAGGACCCC CACCTGCAGC TCCAATAAAA TTGCCGAGAT GATGTTTGGG TTTGTGCTGG 541 ACATTCCTGA GAGGAGCCAG AGAGAAATGT TCTTTACTAC CATGGAAAGC CACCTTCTGC 601 GCTGCAAAGT GTTAGAAATC ATATTCCTCC ACAGCTGTGA GACACCCACC CGCCTGCCTC 661 TGTCTCTGGC CCAGGCCCTC TACTTTCTGA ATAATTCTAC GTCACTGCTC AAGTGTCAGT 721 CAGATAAAAG CCAGTGGCAG ACTTGGGACG AATTGGTTGA GCATCTGCAG TTTCTGCTGT 781 CCAGTTATCA ACATGTTTTA AGAGAACACT TAAGGAGTTC CGTGATCGAC CGAAAGGACT 841 TAATAATCAA AAGGATTAAG CCCAAACCCC AGCAAGGAGA TGACATCACA GTGGTAGACG 901 TAGAGAAGCA GATTGAGGCC TTCCGCAGCC GCCTGATCCA GATGCTGGGG GAGCCTCTTG 961 TCCCCCAACT CCAAGACAAA GTGCACTTGT TGAAGCTCCT GCTCTTCTAT GCTGCGGACT 1021 TGAACCCTGA TGCAGAGCCC TTTCAAAAGG GCTGGAGCGG CTCCTGCCCA ACTTTCTAGT 1081 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c