Transcript: Mouse NM_001136476.1

Mus musculus Sycp3 like X-linked (Slx), mRNA.

Source:
NCBI, updated 2015-12-24
Taxon:
Mus musculus (mouse)
Gene:
Slx (664829)
Length:
924
CDS:
164..802

Additional Resources:

NCBI RefSeq record:
NM_001136476.1
NBCI Gene record:
Slx (664829)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001136476.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000262248 TGAAGTAGTAGTTGGAGATAC pLKO_005 529 CDS 100% 10.800 6.480 N Slx n/a
2 TRCN0000177598 CCAAAGGATGGTTACTTATTA pLKO.1 191 CDS 100% 15.000 7.500 Y Gm4836 n/a
3 TRCN0000253106 TAGAAGCAGATGAAGATATAA pLKO_005 306 CDS 100% 15.000 7.500 Y Gm5169 n/a
4 TRCN0000255531 ACCAAAGGATGGTTACTTATT pLKO_005 190 CDS 100% 13.200 6.600 Y Gm10486 n/a
5 TRCN0000255755 AGAAGCAGATGAAGATATAAG pLKO_005 307 CDS 100% 13.200 6.600 Y Gm1993 n/a
6 TRCN0000255532 AGAAGTTTGATATGGATATAC pLKO_005 582 CDS 100% 13.200 6.600 Y Gm10486 n/a
7 TRCN0000281404 AGACAGTATGTTGGATAAATC pLKO_005 337 CDS 100% 13.200 6.600 Y Gm6121 n/a
8 TRCN0000256210 ATTTGGCAAACATGAGAATAT pLKO_005 274 CDS 100% 13.200 6.600 Y Gm2030 n/a
9 TRCN0000255758 CAAAGGATGGTTACTTATTAC pLKO_005 192 CDS 100% 13.200 6.600 Y Gm1993 n/a
10 TRCN0000177599 CAAGACAGTATGTTGGATAAA pLKO.1 335 CDS 100% 13.200 6.600 Y Gm4836 n/a
11 TRCN0000255757 CAGAAGTTTGATATGGATATA pLKO_005 581 CDS 100% 13.200 6.600 Y Gm1993 n/a
12 TRCN0000255323 CATTTGGCAAACATGAGAATA pLKO_005 273 CDS 100% 13.200 6.600 Y Gm6121 n/a
13 TRCN0000255533 CGTAGAAGCAGATGAAGATAT pLKO_005 304 CDS 100% 13.200 6.600 Y Gm10486 n/a
14 TRCN0000198925 GCAGGCTCATTCTGAAGTAAA pLKO.1 244 CDS 100% 13.200 6.600 Y Gm4836 n/a
15 TRCN0000262079 GTAGAAGCAGATGAAGATATA pLKO_005 305 CDS 100% 13.200 6.600 Y Gm10488 n/a
16 TRCN0000262244 GTGTGAGCAGAAGTTTGATAT pLKO_005 574 CDS 100% 13.200 6.600 Y Slx n/a
17 TRCN0000256213 TTCTCACTTGCTGGTACATTT pLKO_005 861 3UTR 100% 13.200 6.600 Y Gm2030 n/a
18 TRCN0000262127 TTTGGCAAACATGAGAATATG pLKO_005 275 CDS 100% 13.200 6.600 Y Gm2012 n/a
19 TRCN0000272121 ACAAGACAGTATGTTGGATAA pLKO_005 334 CDS 100% 10.800 5.400 Y Gm14819 n/a
20 TRCN0000262246 ACTTATTACTTCTTGACTTTG pLKO_005 204 CDS 100% 10.800 5.400 Y Slx n/a
21 TRCN0000282086 AGAAGAAGAGCAGGCTCATTC pLKO_005 235 CDS 100% 10.800 5.400 Y Gm10488 n/a
22 TRCN0000272137 AGAGATGAACAAGACAGTATG pLKO_005 326 CDS 100% 10.800 5.400 Y Gm10487 n/a
23 TRCN0000282085 ATGATGATGGGAATGCAAATC pLKO_005 507 CDS 100% 10.800 5.400 Y Gm10488 n/a
24 TRCN0000262245 CAGGCTCATTCTGAAGTAAAG pLKO_005 245 CDS 100% 10.800 5.400 Y Slx n/a
25 TRCN0000255325 CATGATGATGGGAATGCAAAT pLKO_005 506 CDS 100% 10.800 5.400 Y Gm6121 n/a
26 TRCN0000270442 GAAGTAAAGAGGCCAGCATTT pLKO_005 257 CDS 100% 10.800 5.400 Y Gm5935 n/a
27 TRCN0000255535 GAGACCAACAACTACGATATG pLKO_005 749 CDS 100% 10.800 5.400 Y Gm10486 n/a
28 TRCN0000177273 GCAGAAGTTTGATATGGATAT pLKO.1 580 CDS 100% 10.800 5.400 Y Gm4836 n/a
29 TRCN0000282088 GGAAGTACAGAATCCAGTAAC pLKO_005 484 CDS 100% 10.800 5.400 Y Gm10488 n/a
30 TRCN0000253107 GGAGACCAACAACTACGATAT pLKO_005 748 CDS 100% 10.800 5.400 Y Gm5169 n/a
31 TRCN0000256699 TCTCACTTGCTGGTACATTTG pLKO_005 862 3UTR 100% 10.800 5.400 Y Gm4297 n/a
32 TRCN0000262247 TGCTTCTGAATTGGACCTTAT pLKO_005 463 CDS 100% 10.800 5.400 Y Slx n/a
33 TRCN0000255324 TGGATATACAGAAATTCAATG pLKO_005 594 CDS 100% 10.800 5.400 Y Gm6121 n/a
34 TRCN0000270444 TGTGAGCAGAAGTTTGATATG pLKO_005 575 CDS 100% 10.800 5.400 Y Gm5935 n/a
35 TRCN0000255756 TTTCCCATCTTCAGACTAATG pLKO_005 828 3UTR 100% 10.800 5.400 Y Gm1993 n/a
36 TRCN0000272285 CGTTCTGTAGAGACACCAATG pLKO_005 401 CDS 100% 6.000 3.000 Y Gm14632 n/a
37 TRCN0000267556 GTAGTTGGAGATACACGAAAG pLKO_005 536 CDS 100% 6.000 3.000 Y Gm6121 n/a
38 TRCN0000272262 ACGTAGAAGCAGATGAAGATA pLKO_005 303 CDS 100% 5.625 2.813 Y Gm10096 n/a
39 TRCN0000270058 AGTTGGAGATACACGAAAGAA pLKO_005 538 CDS 100% 5.625 2.813 Y Gm5168 n/a
40 TRCN0000347815 CAGACCCTGGAAGCAATTGAA pLKO_005 689 CDS 100% 5.625 2.813 Y Gm14525 n/a
41 TRCN0000284688 GAAGTCCATGGAGGGTTTGAT pLKO_005 721 CDS 100% 5.625 2.813 Y Gm10147 n/a
42 TRCN0000270059 GAAGTTTGATATGGATATACA pLKO_005 583 CDS 100% 5.625 2.813 Y Gm5168 n/a
43 TRCN0000272284 TAAGTGGTGAACAGCAAGTTA pLKO_005 438 CDS 100% 5.625 2.813 Y Gm14632 n/a
44 TRCN0000262131 ACACGAAAGAAGATCAACAAC pLKO_005 548 CDS 100% 4.950 2.475 Y Gm2012 n/a
45 TRCN0000284666 ACAGAATCCAGTAACTCATGA pLKO_005 490 CDS 100% 4.950 2.475 Y Gm10058 n/a
46 TRCN0000272223 ACGTTCTGTAGAGACACCAAT pLKO_005 400 CDS 100% 4.950 2.475 Y Gm10058 n/a
47 TRCN0000285694 AGACCAACAACTACGATATGC pLKO_005 750 CDS 100% 4.950 2.475 Y Gm14819 n/a
48 TRCN0000347861 AGTAGTTGGAGATACACGAAA pLKO_005 535 CDS 100% 4.950 2.475 Y Gm14525 n/a
49 TRCN0000363996 AGTAGTTGGAGATACACGAAA pLKO_005 535 CDS 100% 4.950 2.475 Y Gm10487 n/a
50 TRCN0000272162 ATACACGAAAGAAGATCAACA pLKO_005 546 CDS 100% 4.950 2.475 Y Gm10230 n/a
51 TRCN0000285691 ATATGCCGCCTCACGTAGAAG pLKO_005 291 CDS 100% 4.950 2.475 Y Gm14819 n/a
52 TRCN0000272264 CACGAAAGAAGATCAACAACA pLKO_005 549 CDS 100% 4.950 2.475 Y Gm10096 n/a
53 TRCN0000272192 CAGAATCCAGTAACTCATGAT pLKO_005 491 CDS 100% 4.950 2.475 Y Gm10230 n/a
54 TRCN0000179090 CCAACAACTACGATATGCTTT pLKO.1 753 CDS 100% 4.950 2.475 Y Gm5168 n/a
55 TRCN0000200034 CCTCACGTAGAAGCAGATGAA pLKO.1 299 CDS 100% 4.950 2.475 Y Gm4836 n/a
56 TRCN0000284710 CTCACGTAGAAGCAGATGAAG pLKO_005 300 CDS 100% 4.950 2.475 Y Gm14632 n/a
57 TRCN0000180944 GAACATGGAGACCAACAACTA pLKO.1 742 CDS 100% 4.950 2.475 Y Gm5168 n/a
58 TRCN0000363943 GAAGAAGAGCAGGCTCATTCT pLKO_005 236 CDS 100% 4.950 2.475 Y Gm10230 n/a
59 TRCN0000272136 GAAGTACAGAATCCAGTAACT pLKO_005 485 CDS 100% 4.950 2.475 Y Gm10487 n/a
60 TRCN0000178261 GACCTTATGGAAGTACAGAAT pLKO.1 476 CDS 100% 4.950 2.475 Y Gm4836 n/a
61 TRCN0000177355 GCAGATGAAGATATAAGAGAT pLKO.1 311 CDS 100% 4.950 2.475 Y Gm4836 n/a
62 TRCN0000177276 GCTGGTACATTTGTAACCAAA pLKO.1 870 3UTR 100% 4.950 2.475 Y Xlr n/a
63 TRCN0000284692 GTACAGAATCCAGTAACTCAT pLKO_005 488 CDS 100% 4.950 2.475 Y Gm10096 n/a
64 TRCN0000272234 GTTGGAGATACACGAAAGAAG pLKO_005 539 CDS 100% 4.950 2.475 Y Gm10147 n/a
65 TRCN0000284669 TACACGAAAGAAGATCAACAA pLKO_005 547 CDS 100% 4.950 2.475 Y Gm10058 n/a
66 TRCN0000270443 TAGTTGGAGATACACGAAAGA pLKO_005 537 CDS 100% 4.950 2.475 Y Gm5935 n/a
67 TRCN0000272225 TGGAGACCAACAACTACGATA pLKO_005 747 CDS 100% 4.950 2.475 Y Gm10058 n/a
68 TRCN0000284689 TGGTTACTTATTACTTCTTGA pLKO_005 199 CDS 100% 4.950 2.475 Y Gm10147 n/a
69 TRCN0000272261 AGTGGTGAACAGCAAGTTAGG pLKO_005 440 CDS 100% 4.050 2.025 Y Gm10147 n/a
70 TRCN0000178184 CAACAAATTGTGTGAGCAGAA pLKO.1 565 CDS 100% 4.050 2.025 Y Gm4836 n/a
71 TRCN0000182354 GAAGAAGAAGAGCAGGCTCAT pLKO.1 233 CDS 100% 4.050 2.025 Y Gm4836 n/a
72 TRCN0000272235 GAATATGCCGCCTCACGTAGA pLKO_005 289 CDS 100% 4.050 2.025 Y Gm10147 n/a
73 TRCN0000253103 TACCAAAGGATGGTTACTTAT pLKO_005 189 CDS 100% 0.000 0.000 Y Gm5169 n/a
74 TRCN0000270393 TTCTCACTTGCTGGTACATTG pLKO_005 861 3UTR 100% 10.800 5.400 Y Gm5934 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001136476.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.