Transcript: Human NM_001178040.2

Homo sapiens syntaxin 3 (STX3), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-07-23
Taxon:
Homo sapiens (human)
Gene:
STX3 (6809)
Length:
6040
CDS:
231..1064

Additional Resources:

NCBI RefSeq record:
NM_001178040.2
NBCI Gene record:
STX3 (6809)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001178040.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000303420 GACCTGACTCAGCTAACAATC pLKO_005 1135 3UTR 100% 10.800 15.120 N STX3 n/a
2 TRCN0000065015 GCAGCTCGAAATTACTGGCAA pLKO.1 683 CDS 100% 2.640 3.696 N STX3 n/a
3 TRCN0000303419 AGAGCATGGAGAAGCATATTG pLKO_005 517 CDS 100% 13.200 9.240 N STX3 n/a
4 TRCN0000065014 GCAGCTCACGACTGAGATTAA pLKO.1 464 CDS 100% 13.200 9.240 N STX3 n/a
5 TRCN0000299058 GCAGCTCACGACTGAGATTAA pLKO_005 464 CDS 100% 13.200 9.240 N STX3 n/a
6 TRCN0000379420 CAGACCTTCGGATTCGGAAAT pLKO_005 562 CDS 100% 10.800 7.560 N STX3 n/a
7 TRCN0000065016 GATTGAGGAAACTCGGCTTAA pLKO.1 344 CDS 100% 10.800 7.560 N STX3 n/a
8 TRCN0000310352 GATTGAGGAAACTCGGCTTAA pLKO_005 344 CDS 100% 10.800 7.560 N STX3 n/a
9 TRCN0000340167 TCTTCACTTCTGGGATCATTG pLKO_005 757 CDS 100% 10.800 7.560 N Stx3 n/a
10 TRCN0000340239 GATCATGATCTGCTGTATTAT pLKO_005 3391 3UTR 100% 15.000 9.000 N Stx3 n/a
11 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 5242 3UTR 100% 10.800 5.400 Y SMIM11A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001178040.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01616 pDONR223 100% 93.4% 92.3% None (many diffs) n/a
2 ccsbBroad304_01616 pLX_304 0% 93.4% 92.3% V5 (many diffs) n/a
3 TRCN0000474779 AGGTACGACCTCGACTATGCATTC pLX_317 11.4% 93.4% 92.3% V5 (many diffs) n/a
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