Transcript: Human NM_001242680.2

Homo sapiens zinc finger protein 729 (ZNF729), mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
ZNF729 (100287226)
Length:
3844
CDS:
86..3844

Additional Resources:

NCBI RefSeq record:
NM_001242680.2
NBCI Gene record:
ZNF729 (100287226)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001242680.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000230528 AGACATGAGATGGTAACTAAA pLKO_005 311 CDS 100% 13.200 6.600 Y ZNF99 n/a
2 TRCN0000160536 CTCAACCCTTATGAAACATAA pLKO.1 1417 CDS 100% 13.200 6.600 Y ZNF708 n/a
3 TRCN0000243748 CTGGAAAGAAACCCTACAAAT pLKO_005 1365 CDS 100% 13.200 6.600 Y Gm6871 n/a
4 TRCN0000096537 CTGGAGAGAAACCCTACAAAT pLKO.1 1197 CDS 100% 13.200 6.600 Y Zfp934 n/a
5 TRCN0000235358 CTGGAGAGAAACCCTACAAAT pLKO_005 1197 CDS 100% 13.200 6.600 Y 2810408B13Rik n/a
6 TRCN0000244342 CTGGAGAGAAACCCTACAAAT pLKO_005 1197 CDS 100% 13.200 6.600 Y EG668616 n/a
7 TRCN0000019457 CCTCACACCTTACTAGACATA pLKO.1 1500 CDS 100% 4.950 2.475 Y ZNF681 n/a
8 TRCN0000018502 GATGTTAGAGAACTACAGAAA pLKO.1 208 CDS 100% 4.950 2.475 Y ZNF493 n/a
9 TRCN0000015885 GCAATTCATACTGGAGAGAAA pLKO.1 1523 CDS 100% 4.950 2.475 Y ZNF702P n/a
10 TRCN0000158848 GAGAAACCTTACAAATGTGAT pLKO.1 2042 CDS 100% 4.950 2.475 Y ZNF28 n/a
11 TRCN0000149073 GCAAAGCCTTTAACCAGTCTT pLKO.1 3582 CDS 100% 4.950 2.475 Y ZNF714 n/a
12 TRCN0000147979 GCAATTCATACTGGAGAGAAT pLKO.1 1523 CDS 100% 4.950 2.475 Y ZNF321P n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001242680.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15278 pDONR223 59.5% 39.8% 33.8% None (many diffs) n/a
2 ccsbBroad304_15278 pLX_304 0% 39.8% 33.8% V5 (many diffs) n/a
3 ccsbBroadEn_11384 pDONR223 100% 6.4% 5.5% None (many diffs) n/a
4 ccsbBroad304_11384 pLX_304 0% 6.4% 5.5% V5 (many diffs) n/a
5 TRCN0000470576 TACATACAGACCTACACGTAGACC pLX_317 100% 6.4% 5.5% V5 (many diffs) n/a
6 ccsbBroadEn_15729 pDONR223 0% 5.7% 5.1% None (many diffs) n/a
7 ccsbBroad304_15729 pLX_304 0% 5.7% 5.1% V5 (many diffs) n/a
8 TRCN0000470492 GCCGACTTGCTCCATGATGCAGCT pLX_317 100% 5.7% 5.1% V5 (many diffs) n/a
9 ccsbBroadEn_13746 pDONR223 100% 5.2% 4.7% None (many diffs) n/a
10 ccsbBroad304_13746 pLX_304 0% 5.2% 4.7% V5 (many diffs) n/a
11 TRCN0000475669 ATTCGCAGCGAGTTTGTCCGCCGC pLX_317 100% 5.2% 4.7% V5 (many diffs) n/a
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