Construct: ORF TRCN0000470492
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017724.1_s317c1
- Derived from:
- ccsbBroadEn_15729
- DNA Barcode:
- GCCGACTTGCTCCATGATGCAGCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF273 (10793)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000470492
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451521.1 | 88.8% | 83.9% | (many diffs) |
| 2 | human | 51427 | ZNF107 | zinc finger protein 107 | XM_024446791.1 | 85.1% | 77.7% | (many diffs) |
| 3 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001348689.2 | 85.1% | 76.5% | (many diffs) |
| 4 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256172.2 | 82.3% | 74.7% | (many diffs) |
| 5 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001348688.2 | 82% | 75.2% | (many diffs) |
| 6 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278665.2 | 77.5% | 71.7% | (many diffs) |
| 7 | human | 199777 | ZNF626 | zinc finger protein 626 | NM_145297.3 | 76.4% | 62.5% | (many diffs) |
| 8 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001367577.1 | 73.2% | 67.8% | (many diffs) |
| 9 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271637.2 | 69.5% | 46.5% | (many diffs) |
| 10 | human | 284443 | ZNF493 | zinc finger protein 493 | NM_145326.3 | 65.7% | 62.1% | (many diffs) |
| 11 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_001329974.1 | 65.2% | 54.4% | (many diffs) |
| 12 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001348687.2 | 63.5% | 58.1% | (many diffs) |
| 13 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355241.2 | 60% | 55.3% | (many diffs) |
| 14 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355240.1 | 59.9% | 52.1% | (many diffs) |
| 15 | human | 7644 | ZNF91 | zinc finger protein 91 | XM_024451693.1 | 59% | 53.7% | (many diffs) |
| 16 | human | 340252 | ZNF680 | zinc finger protein 680 | NM_001130022.1 | 58% | 53.6% | (many diffs) |
| 17 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_017012129.1 | 57.1% | 50.7% | (many diffs) |
| 18 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_001329971.1 | 52% | 41.9% | (many diffs) |
| 19 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_001329973.1 | 51.6% | 41.6% | (many diffs) |
| 20 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355239.2 | 49.1% | 45.6% | (many diffs) |
| 21 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001160183.3 | 49% | 44.8% | (many diffs) |
| 22 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_001329972.1 | 43.2% | 37.4% | (many diffs) |
| 23 | human | 7757 | ZNF208 | zinc finger protein 208 | NR_138252.1 | 25.1% | (many diffs) | |
| 24 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271639.2 | 19.9% | 17.9% | (many diffs) |
| 25 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355237.2 | 18.7% | 16.8% | (many diffs) |
| 26 | human | 102724427 | LOC102724427 | uncharacterized LOC102724427 | XR_936398.2 | 17.3% | (many diffs) | |
| 27 | human | 90649 | ZNF486 | zinc finger protein 486 | NM_052852.4 | 15.2% | 12.6% | (many diffs) |
| 28 | human | 100129543 | ZNF730 | zinc finger protein 730 | NM_001277403.2 | 14.3% | 13.7% | (many diffs) |
| 29 | human | 646864 | ZNF723 | zinc finger protein 723 | NM_001349726.2 | 14% | 12.9% | (many diffs) |
| 30 | human | 646864 | ZNF723 | zinc finger protein 723 | XM_024451652.1 | 14% | 12.9% | (many diffs) |
| 31 | human | 7639 | ZNF85 | zinc finger protein 85 | NR_045830.2 | 14% | (many diffs) | |
| 32 | human | 100129543 | ZNF730 | zinc finger protein 730 | XM_017026115.2 | 14% | 13.2% | (many diffs) |
| 33 | human | 56242 | ZNF253 | zinc finger protein 253 | NM_021047.3 | 14% | 12.2% | (many diffs) |
| 34 | human | 100129543 | ZNF730 | zinc finger protein 730 | XM_017026114.1 | 14% | 13.2% | (many diffs) |
| 35 | human | 10793 | ZNF273 | zinc finger protein 273 | NM_021148.2 | 13.9% | 13.1% | (many diffs) |
| 36 | human | 340252 | ZNF680 | zinc finger protein 680 | NM_178558.5 | 13.7% | 12.1% | (many diffs) |
| 37 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351669.2 | 13.3% | 11.5% | (many diffs) |
| 38 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_173531.4 | 13.3% | 11.5% | (many diffs) |
| 39 | human | 113835 | ZNF257 | zinc finger protein 257 | NM_033468.4 | 13.3% | 12% | (many diffs) |
| 40 | human | 199777 | ZNF626 | zinc finger protein 626 | NM_001076675.3 | 13.3% | 11.2% | (many diffs) |
| 41 | human | 646864 | ZNF723 | zinc finger protein 723 | XM_024451653.1 | 13.2% | 12.1% | (many diffs) |
| 42 | human | 100129842 | ZNF737 | zinc finger protein 737 | NM_001159293.2 | 13% | 11.4% | (many diffs) |
| 43 | human | 80264 | ZNF430 | zinc finger protein 430 | NM_001172671.2 | 12.8% | 11.9% | (many diffs) |
| 44 | human | 80264 | ZNF430 | zinc finger protein 430 | NM_025189.4 | 12.8% | 11.9% | (many diffs) |
| 45 | human | 7562 | ZNF708 | zinc finger protein 708 | NM_021269.3 | 12.7% | 11.8% | (many diffs) |
| 46 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_006722597.4 | 12.7% | 11.1% | (many diffs) |
| 47 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_011527599.3 | 12.7% | 11.1% | (many diffs) |
| 48 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_005259697.4 | 12.7% | 11.1% | (many diffs) |
| 49 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_011527598.3 | 12.7% | 11.1% | (many diffs) |
| 50 | human | 148198 | ZNF98 | zinc finger protein 98 | NM_001098626.2 | 12.6% | 11.3% | (many diffs) |
| 51 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_003429.5 | 12.3% | 10.8% | (many diffs) |
| 52 | human | 171392 | ZNF675 | zinc finger protein 675 | NM_138330.3 | 12.3% | 10.6% | (many diffs) |
| 53 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_152626.4 | 12.2% | 10.8% | (many diffs) |
| 54 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027204.2 | 12.2% | 11.3% | (many diffs) |
| 55 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355404.2 | 11.8% | 10.9% | (many diffs) |
| 56 | human | 7643 | ZNF90 | zinc finger protein 90 | NM_007138.2 | 11.8% | 9.9% | (many diffs) |
| 57 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001244038.2 | 11.7% | 10.2% | (many diffs) |
| 58 | human | 388523 | ZNF728 | zinc finger protein 728 | NM_001267716.2 | 11.7% | 9.9% | (many diffs) |
| 59 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027201.1 | 11.7% | 10.7% | (many diffs) |
| 60 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256171.1 | 11.7% | 10.4% | (many diffs) |
| 61 | human | 81931 | ZNF93 | zinc finger protein 93 | NM_031218.4 | 11.3% | 9.6% | (many diffs) |
| 62 | human | 7639 | ZNF85 | zinc finger protein 85 | XM_011528263.2 | 11.2% | 10.3% | (many diffs) |
| 63 | human | 148213 | ZNF681 | zinc finger protein 681 | NM_138286.3 | 11.1% | 9.7% | (many diffs) |
| 64 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_203282.4 | 11% | 10% | (many diffs) |
| 65 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355406.2 | 10.9% | 10% | (many diffs) |
| 66 | human | 353088 | ZNF429 | zinc finger protein 429 | NM_001001415.4 | 10.4% | 9.7% | (many diffs) |
| 67 | human | 353088 | ZNF429 | zinc finger protein 429 | XM_017026748.2 | 10.2% | 9.3% | (many diffs) |
| 68 | human | 353088 | ZNF429 | zinc finger protein 429 | XM_017026749.1 | 10.2% | 9.3% | (many diffs) |
| 69 | human | 353088 | ZNF429 | zinc finger protein 429 | NM_001346912.2 | 9.9% | 9.1% | (many diffs) |
| 70 | human | 100129842 | ZNF737 | zinc finger protein 737 | XR_001753570.2 | 9.7% | (many diffs) | |
| 71 | human | 284443 | ZNF493 | zinc finger protein 493 | NM_001076678.3 | 9.3% | 8.1% | (many diffs) |
| 72 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_003423.4 | 9.1% | 7.9% | (many diffs) |
| 73 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256653.1 | 9% | 7.9% | (many diffs) |
| 74 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446635.1 | 8.8% | 8.1% | (many diffs) |
| 75 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446636.1 | 8.8% | 8.1% | (many diffs) |
| 76 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446637.1 | 8.8% | 8.1% | (many diffs) |
| 77 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446638.1 | 8.8% | 8.1% | (many diffs) |
| 78 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446639.1 | 8.8% | 8.1% | (many diffs) |
| 79 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446640.1 | 8.8% | 8.1% | (many diffs) |
| 80 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446641.1 | 8.8% | 8.1% | (many diffs) |
| 81 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256648.2 | 8.4% | 7.2% | (many diffs) |
| 82 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256649.2 | 8.4% | 7.2% | (many diffs) |
| 83 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256650.2 | 8.4% | 7.2% | (many diffs) |
| 84 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_011528257.3 | 8.4% | 7.2% | (many diffs) |
| 85 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_011528259.3 | 8.4% | 7.2% | (many diffs) |
| 86 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027207.2 | 8.4% | 7.2% | (many diffs) |
| 87 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027208.2 | 8.4% | 7.2% | (many diffs) |
| 88 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027209.2 | 8.4% | 7.2% | (many diffs) |
| 89 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027210.2 | 8.4% | 7.2% | (many diffs) |
| 90 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027211.2 | 8.4% | 7.2% | (many diffs) |
| 91 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027212.2 | 8.4% | 7.2% | (many diffs) |
| 92 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027213.2 | 8.4% | 7.2% | (many diffs) |
| 93 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027214.2 | 8.4% | 7.2% | (many diffs) |
| 94 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027215.2 | 8.4% | 7.2% | (many diffs) |
| 95 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027216.2 | 8.4% | 7.2% | (many diffs) |
| 96 | human | 51427 | ZNF107 | zinc finger protein 107 | NM_001282359.1 | 8.3% | 7.3% | (many diffs) |
| 97 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_006715959.2 | 8.2% | 7% | (many diffs) |
| 98 | human | 113835 | ZNF257 | zinc finger protein 257 | NM_001316996.2 | 8.2% | 7.6% | (many diffs) |
| 99 | human | 7652 | ZNF99 | zinc finger protein 99 | NM_001080409.3 | 8.1% | 7.2% | (many diffs) |
| 100 | human | 170959 | ZNF431 | zinc finger protein 431 | XR_001753621.1 | 7.8% | (many diffs) | |
| 101 | human | 340252 | ZNF680 | zinc finger protein 680 | XR_428175.4 | 7.4% | (many diffs) | |
| 102 | human | 7697 | ZNF138 | zinc finger protein 138 | NR_073391.2 | 7.3% | (many diffs) | |
| 103 | human | 340252 | ZNF680 | zinc finger protein 680 | XR_001744687.1 | 7.1% | (many diffs) | |
| 104 | human | 340252 | ZNF680 | zinc finger protein 680 | XR_002956428.1 | 7% | (many diffs) | |
| 105 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278661.1 | 6.7% | 6% | (many diffs) |
| 106 | human | 7644 | ZNF91 | zinc finger protein 91 | NM_003430.4 | 6.1% | 5.2% | (many diffs) |
| 107 | human | 100287226 | ZNF729 | zinc finger protein 729 | NM_001242680.2 | 5.7% | 5.1% | (many diffs) |
| 108 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_007153.3 | 5.7% | 4.6% | (many diffs) |
| 109 | human | 10793 | ZNF273 | zinc finger protein 273 | NR_003099.1 | 5.3% | (many diffs) | |
| 110 | human | 388524 | RPSAP58 | ribosomal protein SA pseudo... | NR_149350.2 | 5% | (many diffs) | |
| 111 | human | 7643 | ZNF90 | zinc finger protein 90 | XR_001753753.2 | 5% | (many diffs) | |
| 112 | human | 388524 | RPSAP58 | ribosomal protein SA pseudo... | NR_149351.2 | 4.9% | (many diffs) | |
| 113 | human | 7644 | ZNF91 | zinc finger protein 91 | XR_001753756.2 | 4.3% | (many diffs) | |
| 114 | human | 170959 | ZNF431 | zinc finger protein 431 | XR_001753620.1 | 4.2% | (many diffs) | |
| 115 | human | 7644 | ZNF91 | zinc finger protein 91 | XR_001753755.2 | 3.1% | (many diffs) | |
| 116 | human | 7644 | ZNF91 | zinc finger protein 91 | XR_001753754.2 | 2.4% | (many diffs) | |
| 117 | human | 7644 | ZNF91 | zinc finger protein 91 | XR_002958354.1 | 1.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 333
- ORF length:
- 243
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGGACCACT GACATTTAGG GATGTGGCCA 121 TAAAATTCTC TCTGGAGGAG TGGCAATGCC TGGACACTTC ACAGCAGAAT TTGTATAGGA 181 ATGTGATGTT AGATAACTAC AGAAACCTGG TCTTCCTGGG TATTGCTGTC TCTAAGCCAG 241 ACCTGATCAC TTGTCTGGAG CAAGGAAAAG AGCCCTGCAA TATGAAGAGA CATGCGATGG 301 TAGCCAAACC CCCAGGTTGG AGTGCAGTGG CGTGCCCAAC TTTCTTGTAC AAAGTGGTTG 361 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 421 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGC 481 CGACTTGCTC CATGATGCAG CTACGCGTTA AGTCgacaat caacctctgg attacaaaat 541 ttgtgaaaga tt